Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq2383 170 5e-40 seq80 93.3 1e-16 >seq2383 Length=69992 Score = 170 bits (188), Expect = 5e-40 Identities = 279/401 (70%), Gaps = 2/401 (0%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 |||| |||| ||||||||| ||||||||||| || |||| || ||| ||||||||||| Sbjct 59517 GAATGAGCATCGGCTAACTCTGTGCCAGCAGCAGCAGTAAGACAGAGGATGCAAGCGTTA 59458 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 || ||| | |||||||||||||| | || || | |||| | | || |||||| Sbjct 59457 TCCGAAATGATTGGGCGTAAAGCGTCTGTAGCTGGCCTTTTAAGTCCGCCGTCAAATCCT 59398 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 |||| |||| || || | | ||| | || |||| || || || | | Sbjct 59397 ACGGCTCAACCCTAGATAGGCGGTGGAAACTACCAAGCTGGAGTATGGTAGGGGCAGAGG 59338 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||||| ||| ||| |||||||||||||| || | ||||||||| ||| || ||| Sbjct 59337 GAATTTTCGGTGGAGCGGTGAAATGCGTAGAGATCGAAAAGAACACCAACGGCAAAAGCA 59278 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | ||||| ||| |||| | | |||||||| |||||||||| ||||||||| Sbjct 59277 CTCTGCTGGGCCGACAATGACTATGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAT 59218 Query 311 ACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACTTCCTTG-- 368 ||||| ||||||| ||| |||||||| ||||| | || | | | || || Sbjct 59217 ACCCTAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGTGTATCGACCCGTGCA 59158 Query 369 GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || |||||| |||||| |||| ||||||||||| ||| Sbjct 59157 GTTTTGTAGCTGACGCGTTAAGTATCCCGCCTGGGGAGTAC 59117 >seq80 Length=449916 Score = 93.3 bits (102), Expect = 1e-16 Identities = 219/328 (67%), Gaps = 2/328 (1%) Strand=Plus/Minus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| |||||||| || ||||| | ||| ||||||||||| Sbjct 102137 GAATAAGCATCGGCTAACTCTATGCCAGCAATCGTGGTAAGATAGAGGATGCAAGCGTTA 102078 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||| | |||||||||||||| ||| || | | || | || ||||||| Sbjct 102077 TCTAGAATGATTGGGCGTAAAGCGTCTATAGGTGGCTTTTAAACTCCACCGTCAAATCCC 102018 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCA-GAGGGGGGT 189 ||| | |||| ||| | | | ||| | |||| | | ||| | | Sbjct 102017 AGGGATCAACCCTGGACAGACGATGGAAACTATTAAGTTGGAGTTCGGTATGAGCGTAGG 101958 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||| ||| ||| || ||||||||||| || | | ||||||||| | |||| || Sbjct 101957 AAAATTTTG-GTGGAGCGGTTAAATGCGTAGAGATCGGAAAGAACACCAACGACGAAAGC 101899 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | |||| ||||| || || | || |||| |||||||||| | |||||| Sbjct 101898 ACTTTGTTGGGCCGACACTAACACTGAGAGACAAAAGATAGGGGAGCAAATTGTATTAGA 101839 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||| ||| ||| ||| |||||||| Sbjct 101838 TACCCTAGTAATCCTAGCCATAAACGAT 101811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289455590592