Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq2383 219 1e-54 seq80 206 7e-51 seq146 174 4e-41 seq72 161 3e-37 seq1456 125 2e-26 seq1439 84.2 6e-14 >seq2383 Length=69992 Score = 219 bits (242), Expect = 1e-54 Identities = 294/412 (71%), Gaps = 28/412 (7%) Strand=Plus/Plus Query 12 TGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGT 71 |||||||||||| || || ||||||| ||| ||| ||||||| ||| ||||| Sbjct 53932 TGCATCTTCACAAACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCAAGATCGT 53991 Query 72 TACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 131 |||||| || ||||| ||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 53992 TACGCCTTTTGTGCATGTCGGAACTTACCCGACAAGGAATTTCACTACCTTAGGACTGTT 54051 Query 132 ATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACC 187 || ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 54052 ATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACC 54111 Query 188 CCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTT 247 | || || ||||||||| || ||| ||||| ||| |||| | ||| || || Sbjct 54112 AACTTCCTTGACATTCCGGCACTGGACAGACGTCATTCCCCATACATGGTCTTACGACTT 54171 Query 248 TGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGA 307 ||| ||| |||||||||| ||||||||||| |||||||| |||||||| Sbjct 54172 TGCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTTCGACC------C 54225 Query 308 GCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTT 367 ||| ||| || | || |||||||||||||||| || | Sbjct 54226 CCTTTGTGAG-----------------GGGGAACCCCATCTCCCGAAGTTACGGGGCTAT 54268 Query 368 TTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||||| |||||||| ||||| |||| || ||| |||||||| |||| Sbjct 54269 TTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGC-CCTAGGTATTCTATACC 54319 >seq80 Length=449916 Score = 206 bits (228), Expect = 7e-51 Identities = 292/412 (71%), Gaps = 29/412 (7%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| |||| | ||| ||| || Sbjct 53127 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCAAGACCGTGCCCAGATCTTT 53186 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || || ||||||| ||| ||||||||||||| ||||||||||| |||||||||| ||||| Sbjct 53187 ACTCCTTTCGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGATACCTTAGGATCGTTA 53246 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | |||||||||| |||| ||||||||||||||| ||| | | | || | ||| Sbjct 53247 TAGTTACGGCCGACGTTCACCGGGGCTTCGATCGCCGGCTCCCCTGTCTTCAGGTCACCA 53306 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| ||||||||||| ||| |||| | ||| | ||| Sbjct 53307 ACTTCCTTGACCTTCCGGCACTAGGCAGGCGTCAGCCCCCATACATGGTCTTAAGACTTT 53366 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGC-ATGA 307 |||| ||||||||| ||||||||||| |||||||| |||||||| | ||| Sbjct 53367 TTAGAGACCTGTGTTTTCGGTAAACAGTCGCCCGGGCCTGGTCACTTCGACCCCCTATG- 53425 Query 308 GCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTT 367 |||| || ||| ||||||||||||||||||| || | Sbjct 53426 ------TGAGCGGGT-----ACC------------CCTTCTCCCGAAGTTACGGGGCTAT 53462 Query 368 TTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 |||||| |||||||| | ||| |||| | || ||||||||||||| Sbjct 53463 TTTGCCGAGTTCCTTAGAGAGTGTTATCTCGCACCCCAAGGTATTCTCTACC 53514 >seq146 Length=330319 Score = 174 bits (192), Expect = 4e-41 Identities = 129/151 (85%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 11 CTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCG 70 ||||||||||||| || || ||||||| ||| ||| ||||||| ||| |||| Sbjct 210225 CTGCATCTTCACAAACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCG 210166 Query 71 TTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 130 ||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 210165 TTACGCCTTTCGTGCGGGTCGGAACTTATCCGACAAGGAATTTCGCTACCTTAGGACCGT 210106 Query 131 TATTGTTACGGCCGCCGTTTACCGGGGCTTC 161 ||| ||||||| ||||||| ||||||||||| Sbjct 210105 TATAGTTACGGTCGCCGTTCACCGGGGCTTC 210075 >seq72 Length=454156 Score = 161 bits (178), Expect = 3e-37 Identities = 286/417 (69%), Gaps = 30/417 (7%) Strand=Plus/Plus Query 15 ATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTAC 74 ||||||||| || || ||||||| | |||| |||||| | | |||||||| Sbjct 336085 ATCTTCACATACATGTCTATTTCACCAACTCTCTCTCCGAGACAATGTCAAGATCGTTAC 336144 Query 75 GCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATT 134 ||| || |||||||| ||||||||||||||||||||||| ||||||||| ||| |||| Sbjct 336145 GCCTTTTGTGCAGGTTAGAACTTACCCGACAAGGAATTTCTCTACCTTAGAACCATTATA 336204 Query 135 GTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGC----GTTAGCTAACCCCA 190 ||||| | |||||| | |||||||||| ||| || | | | || | ||| Sbjct 336205 GTTACAGTAGCCGTTCATCGGGGCTTCGGTCACCGACTCCCCTATTATCAGGTCACCAAC 336264 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 | || ||||||| ||||||| ||| |||| ||| |||| | ||| || ||| | Sbjct 336265 TTCCTTGACCTTCCAGCACCGGAAAGGTGTCA-TCCCCATACATTGTCTTACGACTTTTC 336323 Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTC-GACCGGCATGAGC 309 ||| |||||||||| ||||||||| | ||||||||| ||||| ||| | || Sbjct 336324 GGAGACCTGTGTTTTTGGTAAACAGTCACCCCGGCCTGGTCTCTTCAAACCCTCTTG--- 336380 Query 310 TTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTTT 369 | | || ||| |||| ||||| ||||||||||| | ||| Sbjct 336381 TGAAGGGGCA---CCTT------------------TTCTCTCGAAGTTACGGGACTATTT 336419 Query 370 TGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||| |||||||| ||||| ||| || ||| ||| ||||||||| | |||| Sbjct 336420 TGCTGAGTTCCTTAGAGAGAGTTGTCTTTCGCCCCTAGGTTTTCTCTACCTACCCAC 336476 >seq1456 Length=103472 Score = 125 bits (138), Expect = 2e-26 Identities = 115/148 (78%), Gaps = 13/148 (9%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 12627 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCTAGATCGTT 12568 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||| ||| |||||||||||||||||| ||||||||||||||| Sbjct 12567 ACGCCTTTCATGCGGGTCGGAACTTACCCGAC-------------ACCTTAGGACCGTTA 12521 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTT 160 | ||||||||||||||| |||||||||| Sbjct 12520 TAGTTACGGCCGCCGTTCACCGGGGCTT 12493 >seq1439 Length=99995 Score = 84.2 bits (92), Expect = 6e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 53 GAGACAGCGCCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATT 112 ||||||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||| Sbjct 81119 GAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATT 81178 Query 113 T 113 | Sbjct 81179 T 81179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260658815616