Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq2383 396 8e-108 seq80 271 2e-70 seq1291 141 3e-31 seq585 96.9 1e-17 seq2494 95.1 4e-17 seq340 93.3 1e-16 >seq2383 Length=69992 Score = 396 bits (438), Expect = 8e-108 Identities = 386/495 (78%), Gaps = 3/495 (1%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 59119 TACGTTCGCAAGAATGAAACTCAAAGGAATTGATAGGGGCCCGCACAAGCGGTGGAGCAT 59060 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| ||| |||| | || |||| Sbjct 59059 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTTACATGCCGCGAATCCTC 59000 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||||| | || | ||| || | ||| ||||||||||| ||||||||| Sbjct 58999 TTGAAAGAGAGGGGTGCCTTA--GGGAACGCGGACACATGTGATGCATGGCTGTCGTCAG 58942 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| ||| || ||||||||||||||||||||||||||||||||| | ||||||| Sbjct 58941 CTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGA 58882 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || || | || ||||||||| || | ||||||||||| ||| Sbjct 58881 CAACGTTTAGTTTGGAACCCTGAACAGAATGCCGGTGATAAGCTGGAGGAAGGTGAGGAT 58822 Query 301 GACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATAC 360 ||| |||| ||||||||||||||||| | ||| | | ||||| |||||||| | || Sbjct 58821 GACATCAAGTCATCATGCCCCTTATGCCCTAGGCGAAAAACGTGTTACAATGGCCGGGAC 58762 Query 361 AAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTG 420 |||||| |||| ||| |||| ||| || |||| ||| || |||||||||| ||| Sbjct 58761 AAAGGGTCGCGATCCCGTGAGGGTGAGCTAAACCCAAAAACCCGTCCTCAGTTCGGTTTG 58702 Query 421 TAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTA 479 || || |||||| || ||||||| ||||| ||||||||||| | |||| ||| | Sbjct 58701 CAGGCTTCAACTCACCTGCATGAAGCCGGAATTGCTAGTAATCGCCGGTCAGCCATACGG 58642 Query 480 CGGTGAATACGTTCC 494 || ||||| |||||| Sbjct 58641 CGTTGAATTCGTTCC 58627 >seq80 Length=449916 Score = 271 bits (300), Expect = 2e-70 Identities = 354/484 (73%), Gaps = 7/484 (1%) Strand=Plus/Minus Query 15 TGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGA 74 ||||||||||||||||| |||||| |||||||||| ||||||| ||||||||||||||| Sbjct 101725 TGAAACTCAAAGGAATTAACGGGGGCCCGCACAAGTGGTGGAGATTGTGGTTTAATTCGA 101666 Query 75 AGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTT 134 |||| ||||||| |||||||| ||||||| | || ||||| | ||||||| Sbjct 101665 TGCAAAGCGAAGAGCCTTACCAGGGATTGACATGCCGCGAATCCTCTTTAAATAGAGGGG 101606 Query 135 TCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGA 194 |||||||| || | ||| || ||||||| ||||||||||||||| || || Sbjct 101605 ---CCTTCGGGA-ACGCGGAAACAAGTTGTGCATGGCTGTCGTCAGCTCGTGCGGTAAGG 101550 Query 195 TGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGG 254 |||||| ||||||| || |||||||||||||||| | ||| |||||| | || |||| Sbjct 101549 TGTTGGTTTAAGTCTCGGAACGAGCGCAACCCTTGTGTTTATTTGCCAACGTTGAGTTTA 101490 Query 255 GCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATC 314 | || | | |||| |||| || ||||||||||||| || || ||| ||||| Sbjct 101489 GAACCCAGAAAAGACTATTAGTGATAAGCCGGAGGAAGGTGATGATTACACCAAGTCATC 101430 Query 315 ATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAA 374 |||||| | ||| ||||| || |||| ||||||||| |||||||| | || Sbjct 101429 ATGCCCTTCATGCCCTGGGCGACCTACGTCCTACAATGGCTGGGACAAAGGGTCGTGATC 101370 Query 375 CCGCGAG-GTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTC 433 ||||| || || | || |||| ||| | || ||| |||||||| ||| ||| || || Sbjct 101369 TAGCGAGTGTGAA-CTAACCCCAAAAACTCGTCCTCTATTCGGATTATAGGCTGTAATTC 101311 Query 434 GACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTT 492 || || ||| |||||| |||| ||||| ||| ||| | || ||||| ||| Sbjct 101310 ACCTGCATAAAGATGGAATTGCTATAAATCGCCTGCCAGCCATACGGCGATGAATTTGTT 101251 Query 493 CCCG 496 |||| Sbjct 101250 CCCG 101247 >seq1291 Length=104417 Score = 141 bits (156), Expect = 3e-31 Identities = 89/96 (93%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 72182 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 72123 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCA 96 |||||||||||||| |||| |||||||||||||||| Sbjct 72122 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCA 72087 >seq585 Length=161428 Score = 96.9 bits (106), Expect = 1e-17 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 16 GAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAA 75 ||||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| Sbjct 95434 GAAACTCAAAGGAATTGACGGGGGACTGCACAAGCGGTGGAGCATGTGGTTTCATTCGAT 95375 Query 76 GCAACGCG 83 ||||||| Sbjct 95374 ACAACGCG 95367 >seq2494 Length=68470 Score = 95.1 bits (104), Expect = 4e-17 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||| ||| Sbjct 37206 ACAGGTGTTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTCGGTCAAGTCCTATAAC 37147 Query 216 GAGCGCAACCCT 227 ||||| |||||| Sbjct 37146 GAGCGAAACCCT 37135 >seq340 Length=213929 Score = 93.3 bits (102), Expect = 1e-16 Identities = 70/82 (85%), Gaps = 3/82 (4%) Strand=Plus/Plus Query 16 GAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAA 75 ||||||||||||||||||||||| | |||||||| ||||||||||||||||||| | Sbjct 88358 GAAACTCAAAGGAATTGACGGGGGCTTGCACAAGC---GGAGCATGTGGTTTAATTCTAT 88414 Query 76 GCAACGCGAAGAACCTTACCAA 97 |||| || | ||||||||||| Sbjct 88415 ACAACACGCAAAACCTTACCAA 88436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503831582080