Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq224 271 1e-70 seq2430 116 6e-24 seq582 89.7 8e-16 seq4560 86.0 1e-14 seq574 80.6 4e-13 >seq224 Length=384964 Score = 271 bits (300), Expect = 1e-70 Identities = 217/259 (84%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||| ||||| ||||||||||||| |||||||||||||| Sbjct 11534 ACTCGTTGAATACATCAGTGTAGCGTGCGTGTGGCCCAGAACATCCAAGGGCATCACAGA 11475 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||||||||||||| | | || ||| ||||||||||||||||| ||| Sbjct 11474 CCTGTTATTGCCTCAAACTTCTTTGGCCTAAAAGGTCATAGTCCCTCTAAGAAGTTAGCT 11415 Query 122 ACCAACC-ATAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | || ||| || |||| |||||||| | ||||||| ||||||| | ||||| Sbjct 11414 GCGAAGGTATACCTCCGCATAGCTAGTTAGCAGGCTGAGGTCTCCTTCGTTAACAGAATT 11355 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 11354 AACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 11295 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 11294 AAAGAGCTCTCAGTCTGTC 11276 >seq2430 Length=64440 Score = 116 bits (128), Expect = 6e-24 Identities = 76/84 (90%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||| ||||| |||||||||||||||| ||||||||||||||| Sbjct 25658 ACTCGTTGAATACATCAGTGTGGCGCGTGTGCGGCCCAGAACATATAAGGGCATCACAGA 25599 Query 62 CCTGTTATTGCCTCAAACTTCCAT 85 |||||||||||||||||||||||| Sbjct 25598 CCTGTTATTGCCTCAAACTTCCAT 25575 >seq582 Length=157576 Score = 89.7 bits (98), Expect = 8e-16 Identities = 71/85 (84%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGG---CATCAC 58 ||||| || | | ||||||||| ||||||||||| |||||||||||||| |||||| Sbjct 100444 ACTCGTTGAATACATCAGTGTAGTTCGCGTGCGGCCTAGAACATCTAAGGGCATCATCAC 100503 Query 59 AGACCTGTTATTGCCTCAAACTTCC 83 | |||| ||||| |||||||||||| Sbjct 100504 ATACCTTTTATTTCCTCAAACTTCC 100528 >seq4560 Length=32325 Score = 86.0 bits (94), Expect = 1e-14 Identities = 80/99 (81%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 76 || |||| ||| |||| ||| || | ||||||||||||||||| |||||||||||||| Sbjct 13208 CAATGTAACGCCCGTGTGGCACACA-CATCTAAGGGCATCACAAGACTGTTATTGCCTCA 13150 Query 77 AACTTCCATTGGCTGGAA-GCCAATAGTCCCTCTAAGAA 114 ||||||||| | | || ||||| | |||||||| ||| Sbjct 13149 AACTTCCATGGTTTAAAAGGCCAAAAATCCCTCTAGGAA 13111 >seq574 Length=166821 Score = 80.6 bits (88), Expect = 4e-13 Identities = 86/111 (77%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCC-CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 || ||| ||| ||||||| ||| |||||||||||||||||| ||| ||||| ||||| Sbjct 79953 CAATGTGACGCCCGTGCGGGTGCAGCACATCTAAGGGCATCACAAACCAGTTATGGCCTC 80012 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAA 126 |||| ||||| | | ||| | | | ||||||||||||| | |||||| Sbjct 80013 AAACATCCATGGTTTAAAAGACTAAAAGCCCTCTAAGAAGCTA-TCACCAA 80062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796713562638