Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq2383 156 8e-36 seq1380 134 3e-29 seq2208 104 5e-20 >seq2383 Length=69992 Score = 156 bits (172), Expect = 8e-36 Identities = 152/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 148 GCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCG 207 |||| ||||| |||||||||||| ||||| | |||| | ||| || | || Sbjct 53703 GCCTACCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCGGACTGAGATTG-GCC 53645 Query 208 CAC-AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAA 266 | | |||||||||||| ||||| | |||||||| | |||| | ||| |||||||||||| Sbjct 53644 CTCGAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAA 53585 Query 267 AGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGC 326 |||||| |||| ||||||| |||||| || ||||| ||||||||||| ||||||||||| Sbjct 53584 AGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGT 53525 Query 327 TACCCTGGGGATA 339 ||| || |||||| Sbjct 53524 TACTCTAGGGATA 53512 >seq1380 Length=98197 Score = 134 bits (148), Expect = 3e-29 Identities = 160/214 (75%), Gaps = 6/214 (3%) Strand=Plus/Minus Query 129 CAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAG 188 |||||| |||||||| |||||||||| ||||| |||||| ||||| | |||| | Sbjct 61689 CAGTTTCTCTGGGGCGTAGGCCTCCCAAAAGGTAACAGAGGCGTGCAAAGGTTTCCTCGG 61630 Query 189 CTTGGATGGAAACCATGCGCAC---AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACC 245 ||| || | || || | |||||||||||| ||||| | |||||||| | ||| Sbjct 61629 GCCGGACAGAGAT--TG-GCCCGTTAGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACC 61573 Query 246 CTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGC 305 | | ||| |||||||| |||| ||| |||| ||||||| | |||| || ||||| || Sbjct 61572 CACTCGTCGAGCAGGGATAAAAGGCGGCCTTAGTGATCCGACAGTGCCGAGTGGAAGGGT 61513 Query 306 CGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 |||| ||| | ||||||||| ||| || |||||| Sbjct 61512 CGTCACTCAATGGATAAAAGTTACTCTAGGGATA 61479 >seq2208 Length=69165 Score = 104 bits (114), Expect = 5e-20 Identities = 72/82 (88%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 258 AGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACG 317 ||||||||||||||| |||| ||||||| |||||| || ||||| ||||||||||| ||| Sbjct 37582 AGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACG 37641 Query 318 GATAAAAGCTACCCTGGGGATA 339 |||||||| ||| || |||||| Sbjct 37642 GATAAAAGTTACTCTAGGGATA 37663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982289990848