Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq146 104 3e-20 seq2383 89.7 6e-16 seq80 78.8 1e-12 seq72 75.2 1e-11 >seq146 Length=330319 Score = 104 bits (114), Expect = 3e-20 Identities = 112/150 (75%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 ||||||||| |||| || |||| || |||||||||| | | | ||||||| ||| Sbjct 210252 GGGTCTTTTTGTCCAGGTGCAGGTAGTCTGCATCTTCACAAACATGTCTATTTCACCGAG 210193 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||| ||| Sbjct 210192 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTATCCG 210134 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||| Sbjct 210133 ACAAGGAATTTCGCTACCTTAGGACCGTTA 210104 >seq2383 Length=69992 Score = 89.7 bits (98), Expect = 6e-16 Identities = 109/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | || |||| | |||||||||| | | | ||||||| ||| Sbjct 53904 GGGTCTTTCTGTCCAAGTGCAGGTAGTTTGCATCTTCACAAACATGTCTATTTCACCGAG 53963 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || || ||||| ||||||||||||||| Sbjct 53964 C-CTCTCTCCGAGACAGTGCCAAGATCGTTACGCCTTTTGTGCATGTCGGAACTTACCCG 54022 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||| |||||||||||| |||| Sbjct 54023 ACAAGGAATTTCACTACCTTAGGACTGTTA 54052 >seq80 Length=449916 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||| ||||||||||||| ||||||||||| |||||||||| |||| Sbjct 53186 TACTCCTTTCGTGCGGGTTGGAACTTACCCGATAAGGAATTTCGATACCTTAGGATCGTT 53245 Query 173 A 173 | Sbjct 53246 A 53246 >seq72 Length=454156 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || || |||||||| ||||||||||||||||||||||| ||||||||| ||| || Sbjct 336142 TACGCCTTTTGTGCAGGTTAGAACTTACCCGACAAGGAATTTCTCTACCTTAGAACCATT 336201 Query 173 A 173 | Sbjct 336202 A 336202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547140639402