Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq2383 212 1e-52 seq8509 168 1e-39 seq80 113 1e-22 >seq2383 Length=69992 Score = 212 bits (234), Expect = 1e-52 Identities = 237/310 (76%), Gaps = 20/310 (6%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||| ||||| | | |||||||||||||||||| || |||||| ||||||||||| Sbjct 59582 CACGCGACATTGCTTTG-TCAGGCTTTCGCCCATTGCGGAAAATTCCCAACTGCTGCCTC 59640 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| |||||||||||||| |||||| | Sbjct 59641 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 59700 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGAC-CTAGGCTCA 207 || |||| |||||||||| ||| ||| ||||||||||||||||||| ||| | || | | Sbjct 59701 ACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCT 59760 Query 208 TCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAG 267 || || ||| || ||| |||| | | | | || | |||||||| Sbjct 59761 CCT-----CG---GGC-----GGATTCCTCCTTTTGCTTCTCAG-CCTACGGGGTATTAG 59806 Query 268 CGTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCC 325 | |||||||| ||| | ||| || ||| ||||| ||| || || |||||||||| Sbjct 59807 CAGCCGTTTCCAGCTGTTGTTCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCC 59864 Query 326 GTCCGCCGCT 335 ||||||| || Sbjct 59865 GTCCGCCACT 59874 >seq8509 Length=4468 Score = 168 bits (186), Expect = 1e-39 Identities = 122/141 (87%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||||||||||| || ||||||||||||||||||| |||||||||| | || Sbjct 2197 TCAGGCTTTCGCCCATTGCAAAAAATTCCCCACTGCTGCCTCCTGTAGGAGTCTAGGTCG 2256 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||||| |||||||| ||||||||||||||| | ||| || |||| |||||||||| Sbjct 2257 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCATAACAGCTATTGATCATCGCCTTGGT 2316 Query 167 GAGCCATTACCTCACCAACTA 187 ||| ||| |||||||||||| Sbjct 2317 AAGCTATTGCCTCACCAACTA 2337 >seq80 Length=449916 Score = 113 bits (124), Expect = 1e-22 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 ||||||||| | |||||| |||||||||||||| |||||| ||| |||| || ||||||| Sbjct 102255 TGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCACCTTGGT 102314 Query 167 GAGCCATTACCTCACCAACTAGCTAATCCGAC 198 ||| ||| ||||||||||||||||||| ||| Sbjct 102315 AAGCTATTGCCTCACCAACTAGCTAATCGGAC 102346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071879957440