Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq2383 214 7e-53 seq80 134 5e-29 seq7786 109 2e-21 seq72 105 2e-20 seq85 98.7 4e-18 seq301 75.2 4e-11 >seq2383 Length=69992 Score = 214 bits (236), Expect = 7e-53 Identities = 329/461 (71%), Gaps = 25/461 (5%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||| ||||||||||||||| | | ||| || |||| |||||| Sbjct 55087 GCTGCGCCTCAACGCATTTTGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 55146 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||| | ||||||| || Sbjct 55147 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCAGACCTCCACTTAGT 55206 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | || || | | | | | ||| Sbjct 55207 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTTGGTTCCATAAGCAGTG 55266 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTTAACCTC 374 || | ||||||| |||||||||| ||||||||| ||| ||||| | | Sbjct 55267 ACAAT----TGCCCTATGAAGACTCGCTTTTGCTACGGCT---CCA-GTGGGTTCCCTTA 55318 Query 375 GCGACACAAC-GC---AAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTA 430 | | || || | |||| | |||||||||||| |||||||| |||| ||| Sbjct 55319 AAAAAGCCACTGCCTATGAGTCGCCGACTCATTCTTCAACAGGCACGCGGTCA--GGGT- 55375 Query 431 CCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACT 490 | | | | | ||| || | ||| || ||||||||| || || ||||||| Sbjct 55376 ----TATGCCCCCT----TCCAACTGCTTGAGAGCTTATGGTTTCATGTTCTCTTTCACT 55427 Query 491 CCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAG 550 ||||| ||||| ||||||||| ||||||||||||| | | || |||||||||| || Sbjct 55428 CCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTATTACTTCGTTATCGGTCACTTAG 55487 Query 551 GAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACG 591 |||||||||| ||| |||||||| | |||||||||| Sbjct 55488 GAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACG 55528 >seq80 Length=449916 Score = 134 bits (148), Expect = 5e-29 Identities = 314/470 (67%), Gaps = 29/470 (6%) Strand=Plus/Plus Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197 |||||||| |||| |||| ||||| || ||||| | | | ||| || |||| ||||||| Sbjct 68220 CTGCACCTTAATGAATTTTGGGGAAAAGGAGCTAGCTCTAGGTTCGAGTGGCATTTCACC 68279 Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257 ||| ||| | ||||| || | | |||||| ||| ||||||| |||||| || Sbjct 68280 TCTAACCAAAACTCATCTGCTGATTCTTCAACAACAGTCGGTTCGGACCTCCAGTTAGTT 68339 Query 258 TTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC--TTGATCGTGC 315 | |||| |||| | || | |||||||||||||| | | |||| ||| | | ||| Sbjct 68340 TCACCCAAGCTTTATCCCGGTCATGGATAGATCACCTAGGTTCGTGTCCATAAGTAGTGA 68399 Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGG-----TTAA 370 || | ||||||| |||||||||| ||||| | | | ||| |||| Sbjct 68400 CAAT----TGCCCTATGAAGACTCGCTTTTGCTAC----ATCTCTGGTGGGTTCCCTTAA 68451 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| || | | || ||||||||||||| ||||||| |||| Sbjct 68452 CCAAGC--CACTACCTATGAGTCATTTGCTCATTCTTCAATAGGCACG--------TGGT 68501 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 || | | || | | | ||| || | |||||| | | ||||||| Sbjct 68502 ---TAGGGTTGTGTCCCCCTTCCATTGCTTGAGAGCTTACAGTTTCATTTTCGATTTCAC 68558 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 || || ||||| |||||||| ||||||||||||||| | ||||||||||||| | Sbjct 68559 TCTCCAATGGGGGTTATTTTCACCCTTCCCTCACGGTACTGCTTTGCTATCGGTCACCCA 68618 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||| |||||| ||| |||||||| | |||||| | || |||||| Sbjct 68619 GGAGAATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCATATGACATTTCA 68668 >seq7786 Length=7355 Score = 109 bits (120), Expect = 2e-21 Identities = 292/441 (66%), Gaps = 39/441 (9%) Strand=Plus/Minus Query 138 CTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACC 197 |||| || || |||||| ||||||||||||||| | ||| || |||| ||||||| Sbjct 1330 CTGCGACTCAACGCATTTTGGGGAGAACCAGCTAGCTTAGGGTTCGAGTGGCATTTCACC 1271 Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257 ||| ||||| | |||| | | |||||| | ||| ||||||| ||||||| || Sbjct 1270 TCTAACCACAACTTATCCGTTGGTTCTTCAACATCAGTCGGTTCGGACCTCCACCTAGTT 1211 Query 258 TTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGG-TCTT--GATC--- 311 | || | |||||| ||| ||| ||||||||| | || ||| || | || | Sbjct 1210 TAACTCAAGCTTCATCCTAGTTATGTATAGATCACCCAGGTTTGGGTTCATAAGAACAGC 1151 Query 312 -GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----G 366 ||| || | ||||||| ||||| |||||||||||||| | | ||| Sbjct 1150 AGTGGCAAT----TGCCCTATGAAGACTCACTTTCGCTACGGCT---CTCCTCGGTTTCC 1098 Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCA-C 424 |||||| || ||| | | | |||| | ||||||||||| |||||||| |||| Sbjct 1097 TTAACCAAGC--CACTGCCTATGAGTCGCCTGATCATTCTTCAATAGGCACGCTGTCAGG 1040 Query 425 CTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTAT 484 | || || | |||| || ||| || | ||||| | || |||| Sbjct 1039 GTTGTGCC------------CCCCTCCCACTAGTTGAGAGCTTAGGGTTTTATGTTCTAT 992 Query 485 TTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTA-----CTTGTCCGCTAT 539 |||| |||| |||||| ||||||||| ||| ||||| ||| || | ||||| Sbjct 991 TTCAGTCCCTTATAGGGGTTCTTTTCACCCTTCTCTCACAGTACTAAGCTACTTTGCTAT 932 Query 540 CGGTCACCAAGGAGTATTTAG 560 |||||| | |||||||||| Sbjct 931 CGGTCATCCGAGAGTATTTAG 911 >seq72 Length=454156 Score = 105 bits (116), Expect = 2e-20 Identities = 117/155 (75%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 151 CATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGG- 209 |||| |||||||||||||||| | | ||| | |||| ||||||||||| ||||| Sbjct 337291 CATTCCGGGGAGAACCAGCTAGCTCTGGGTTCAAGTGGCATTTCACCCCTAACCACATTC 337350 Query 210 TCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTT 269 ||||| | | | |||||| | ||| ||||||| ||||||| || | |||| |||| Sbjct 337351 TCATCAATTGATTCTTCAACATCAGTTGGTTCGGACCTCCACTTAGTTTCACCCAAGCTT 337410 Query 270 CAACCTGCCCATGGATAGATCACTTCGCTTCGGGT 304 || |||| ||| |||||||||||| | || |||| Sbjct 337411 CATCCTGGTCATTGATAGATCACTTGGGTTTGGGT 337445 >seq85 Length=445629 Score = 98.7 bits (108), Expect = 4e-18 Identities = 80/97 (82%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 481 CTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATC 540 ||||| ||||||| |||| |||||||||||||||||||||||||||| || |||| Sbjct 138612 CTATTGCACTCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGTTATC 138553 Query 541 GGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 ||||| |||| || ||||||||| |||||||||| Sbjct 138552 GGTCATTGAGGAATACTTAGGCTTAGAGGGTGGTCCC 138516 >seq301 Length=217329 Score = 75.2 bits (82), Expect = 4e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 179 GTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGG 238 ||| || |||| ||||||||||| ||||| |||||| || | | ||||| | ||| || Sbjct 189340 GTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGATTCATCAACATCAGTCGG 189399 Query 239 TTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACC 274 ||||| ||||||| ||| | |||| |||||| || Sbjct 189400 TTCGGACCTCCACTTGGTTTCACCCAAGCTTCATCC 189435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817396465152