Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq2383 206 5e-51 seq8509 140 6e-31 seq80 100 6e-19 >seq2383 Length=69992 Score = 206 bits (228), Expect = 5e-51 Identities = 223/293 (76%), Gaps = 18/293 (6%) Strand=Plus/Plus Query 13 TCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCG 72 ||||| |||| ||||||| | || || ||| ||||||||||||||||||||||||||||| Sbjct 59599 TCAGGCTTTCGCCCATTGCGGAAAATTCCCAACTGCTGCCTCCCGTAGGAGTCTGGGCCG 59658 Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||||| |||||| | ||| |||||| | || ||||| |||| ||| |||||| Sbjct 59659 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGT 59718 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGC-GATAAATCT 191 |||||| ||||||||||| |||||| | ||||||||| || | || ||| || Sbjct 59719 AAGCTATTGCCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGGGCGGATTCCTCC 59778 Query 192 TTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTCGTTTCCAAACG 251 || ||| | ||| | | || | ||||||||| |||||||| | Sbjct 59779 TT------------TTGC--TTCTCAGCC--TACGGGGTATTAGCAGCCGTTTCCAGCTG 59822 Query 252 TTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGCCACT 304 || |||| ||| || |||||||| || ||| ||||||||||||||||||||| Sbjct 59823 TTGTTCCCCTCCCAAGGGCAGGTT-CTTACGCGTTACTCACCCGTCCGCCACT 59874 >seq8509 Length=4468 Score = 140 bits (154), Expect = 6e-31 Identities = 119/147 (81%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| |||| ||||||| || || |||||||||||||||| |||||||||| Sbjct 2191 GCTCCGTCAGGCTTTCGCCCATTGCAAAAAATTCCCCACTGCTGCCTCCTGTAGGAGTCT 2250 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 || ||||||||||||||| |||||| | ||| ||||||| | |||| |||| ||| Sbjct 2251 AGGTCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCATAACAGCTATTGATCATCGC 2310 Query 127 CTTGGTGGGCTATTATCTCACCAACTA 153 |||||| |||||| ||||||||||| Sbjct 2311 CTTGGTAAGCTATTGCCTCACCAACTA 2337 >seq80 Length=449916 Score = 100 bits (110), Expect = 6e-19 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 73 TGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTGGT 132 ||||||||||| | |||||| | ||| |||||| | || ||||| |||| || |||||| Sbjct 102255 TGTCTCAGTCCTAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCACCTTGGT 102314 Query 133 GGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATC 175 |||||| ||||||||||| |||||||| ||||||||| || Sbjct 102315 AAGCTATTGCCTCACCAACTAGCTAATCGGACGCGAGCCCCTC 102357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998288199168