Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2540 147 5e-33 seq1456 141 2e-31 seq2383 134 3e-29 seq80 111 4e-22 seq72 109 1e-21 seq4639 96.9 8e-18 >seq2540 Length=62730 Score = 147 bits (162), Expect = 5e-33 Identities = 137/173 (79%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 231 GCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTGAGCTATTACGCACTCTTT 287 |||| | |||||| |||| || ||| || ||||||||||||||| ||| |||| Sbjct 5473 GCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGTGAGCTATTCCGCTTTCTTC 5417 Query 288 CAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCC 347 ||||||||||||||||||||| |||||||||||||| ||| ||| |||||| || Sbjct 5416 AAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCGCTCGATCACTTCCTTTTCC 5357 Query 348 ACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| ||| | ||||||| ||||||| | |||||||||||||||||||||| Sbjct 5356 ACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTCCCTCTCG 5304 >seq1456 Length=103472 Score = 141 bits (156), Expect = 2e-31 Identities = 110/131 (84%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 |||||||| |||||||||||||| |||||||||| | || |||||||||| ||||| || Sbjct 35650 AGCTATTATGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGC 35709 Query 330 AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG 389 | | | || |||||| ||||||| || |||||||||||||||| ||||| |||||| Sbjct 35710 ACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTG 35769 Query 390 TTTCCCTCTCG 400 ||||||||||| Sbjct 35770 TTTCCCTCTCG 35780 Score = 93.3 bits (102), Expect = 1e-16 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 ||||||||||||||||||||||| |||||||||| | || |||||||||| ||||| || Sbjct 33711 AGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCAAGGCAAACCTCCTGGCTGTCTCTGC 33652 Query 330 AACTCCACATCCTTTCCCACTGAG 353 | | | || |||||| ||||||| Sbjct 33651 ACCCCTACCTCCTTTATCACTGAG 33628 >seq2383 Length=69992 Score = 134 bits (148), Expect = 3e-29 Identities = 146/191 (76%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 209 ACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGT 268 ||||||||||| || |||| |||| | | ||| || ||| | | || || |||| Sbjct 54788 ACAGCTTCGGCAGACCGCTTA-GCCCTGTT-CATCTTCAACGCAAGAGCGCTCGATCAGT 54845 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 ||||||||||||| |||||||||| ||||| |||| | || |||||||||| ||||| | Sbjct 54846 GAGCTATTACGCATTCTTTCAAGGGTGGCTACTTCTAGGCAAACCTCCTGGATGTCTCTG 54905 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 || | | || |||||| |||||| || |||||||||||||||| |||| |||| Sbjct 54906 CACCCCTACCTCCTTTATAACTGAGCGGTCATTTAGGGGCCTTAGCTGGGGATCCAGGCT 54965 Query 389 GTTTCCCTCTC 399 |||||| |||| Sbjct 54966 GTTTCCTTCTC 54976 >seq80 Length=449916 Score = 111 bits (122), Expect = 4e-22 Identities = 275/406 (68%), Gaps = 16/406 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| || ||| | ||||||||| | | ||| ||| | | Sbjct 53771 CGACTACGCCTTTCGGCCTGATCTAAGGCCTTGACTCACCCTGCGTGGACGAACCTTGCG 53830 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCAC-ACGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | ||| |||||| ||| Sbjct 53831 GAGGAACCCTTAGGTTTTCGGGGAATTGGATTCTCACCAATGTTTACGTTACTCAAGCCG 53890 Query 120 GCATTCTCACTC--GCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGAC-- 175 ||||||| || || || |||| || ||| | |||| || | || || | Sbjct 53891 ACATTCTCGCTTATGCTTCT--TCCA--ACGCAG-CTCCCGCGCGCGTTTCCCCTTAACA 53945 Query 176 -ACGACGCTCCCCTACCCAACCACACAGGT-TGCCACAGCTTCGGCGGATAACTTAAGCC 233 | | ||||||||||| | | | | ||||||| | | || | ||| ||| Sbjct 53946 TAAAATGCTCCCCTACCAATGCTTTTTTATATCCCACAGC--CAGTAGACCAATTA-GCC 54002 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 || | |||| || ||| | | || || |||||||||||||| |||||||||||| Sbjct 54003 TCG-TCCATTTTCACCGCAAGAGCGCTCGATCAGTGAGCTATTACAAACTCTTTCAAGGG 54061 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 ||||| || | |||||||||| ||||| ||| | | ||||||||| ||||||| Sbjct 54062 TGGCTTCTCTTGGGAAAACCTCCTGGCTGTCTCTGCACCCCTACATCCTTTATCACTGAG 54121 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 | || | | | ||||||| || |||||| |||| ||||||||| Sbjct 54122 CCGTCATTGAAGAGCCTTAGATGGTGATCTAGGCTACTTCCCTCTC 54167 >seq72 Length=454156 Score = 109 bits (120), Expect = 1e-21 Identities = 107/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 257 CACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCC 316 |||| || |||||| ||||| |||||||||||||| | ||| |||| | || ||||||| Sbjct 336984 CACTCGATTAGTGAGTTATTATGCACTCTTTCAAGGGTAGCTTCTTCTAGGCAAACCTCC 337043 Query 317 TGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTG 376 || ||||| ||| | | || |||||| |||| ||| || |||| ||||||||||| Sbjct 337044 AGGATGTCTTTGCACCCCTACCTCCTTTATCACTTAGTGGTCATTTAGAGGCCTTAGCTG 337103 Query 377 ATGATCTGGGCTGTTTCC 394 ||||| |||| ||||| Sbjct 337104 GTGATCCGGGCCATTTCC 337121 >seq4639 Length=31391 Score = 96.9 bits (106), Expect = 8e-18 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 253 GAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAAC 312 ||| | ||||| |||||||||||||||||||||||||||| |||||||||| | || ||| Sbjct 11071 GAAACGCTTGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAAC 11130 Query 313 CTCCTGGTTGTCT 325 ||||||| ||||| Sbjct 11131 CTCCTGGCTGTCT 11143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177468132352