Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq2208 268 1e-69 seq1471 268 1e-69 seq2383 237 2e-60 seq1380 183 5e-44 seq80 116 6e-24 >seq2208 Length=69165 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 37986 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 37927 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 37926 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 37867 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 37866 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 37807 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 37806 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 37747 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 37746 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 37714 >seq1471 Length=100516 Score = 268 bits (296), Expect = 1e-69 Identities = 224/273 (82%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 22043 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 22102 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||||||| |||||||||| |||| |||||||||||||||||| Sbjct 22103 TTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 22162 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| ||||||||||||||| || Sbjct 22163 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACG 22222 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 22223 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 22282 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| |||||||||| | || |||||||||||| Sbjct 22283 ACTACAGCCCCAGGTGGCGAAGAGCCGACATCG 22315 >seq2383 Length=69992 Score = 237 bits (262), Expect = 2e-60 Identities = 217/273 (79%), Gaps = 1/273 (0%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| || | | Sbjct 53189 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCAAACG 53248 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | | |||| | ||| ||| |||||||||| |||| |||||||||||||||||| Sbjct 53249 TTTACCGTGGGCACGATAACAGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 53308 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||||| |||||| |||| ||||||| || | Sbjct 53309 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACTGAACTGTATCAGG 53368 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| || | Sbjct 53369 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACAT 53428 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| ||||| |||| | || |||||||||||| Sbjct 53429 ACTACAGCCTCAGGTGGCGAAGAGCCGACATCG 53461 >seq1380 Length=98197 Score = 183 bits (202), Expect = 5e-44 Identities = 155/191 (81%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 85 GTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTT 144 || ||||| |||| ||||| ||||||||||||| ||||| ||| || ||||||||| | Sbjct 61238 GTACACCAAAGGTGTGTCCTTCCCGGTCCTCTCTTACTAGGGAAAGGTCCTCTCAATGCT 61297 Query 145 CCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || ||||| || ||| ||| |||||||||| ||| |||||||||||||||| ||| Sbjct 61298 TTAACACCCACATCGAATATGGATTGAACTGTCTCACGATGTTCTGAACCCAGCTCACGT 61357 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||||||||| ||||||||| ||||||||| || |||| || ||||||| | || | Sbjct 61358 ACCGCTTTAATGGACGAACAGCCTAACCCTTGGAACATACTACAACCCCAGGTGGCGAAG 61417 Query 265 AGCCGACATCG 275 ||||||||||| Sbjct 61418 AGCCGACATCG 61428 >seq80 Length=449916 Score = 116 bits (128), Expect = 6e-24 Identities = 91/109 (83%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 148 ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCC 207 |||||||| |||| ||||||||||||||| |||||||||||||||| || ||| || Sbjct 52536 ACGCCCACACAAGATATGGACCGAACTGTCTCACGACGTTCTGAACCCATATCACGTACC 52595 Query 208 TCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGG 256 |||||||||||||||| || |||||||| || |||| ||| |||||| Sbjct 52596 GCTTTAATGGGCGAACAACCTAACCCTTGTAACATACTACAGGCCCAGG 52644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780715298328