Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq2383 237 4e-60 seq8509 159 8e-37 seq80 104 6e-20 seq4842 82.4 2e-13 >seq2383 Length=69992 Score = 237 bits (262), Expect = 4e-60 Identities = 296/404 (73%), Gaps = 30/404 (7%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| |||||||| | | |||||| ||| ||| |||||||| ||||||||| | || Sbjct 59562 ACCCGTGGGCCTTCTACCTCCACGCGACATTGCTTTGTCAGGCTTTCGCCCATTGCGGAA 59621 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 59622 AATTCCCAACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGA 59681 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| |||||| ||| || ||| || | ||||||||| Sbjct 59682 TCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTAGC 59741 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| |||| ||| Sbjct 59742 TAATCAGACGCGAGCCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTG--CTTCT 59788 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | || | ||||||||| |||||||||| ||| | ||||||| ||||| ||| Sbjct 59789 CAGCCTACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCT 59848 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 59849 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 59891 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | ||||| |||||||||| || | ||||||||||||| ||||| Sbjct 59892 TCCGACTAGCATGTGTTAAGCATACCGCCAGCGTTCATCCTGAG 59935 >seq8509 Length=4468 Score = 159 bits (176), Expect = 8e-37 Identities = 143/178 (80%), Gaps = 1/178 (1%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| |||||||| | | | | | ||| ||| | |||||||| ||||||||| || Sbjct 2161 ACCCGTGGGCCTTCTACCTCAATG-GACATTGCTCCGTCAGGCTTTCGCCCATTGCAAAA 2219 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 ||||||||||||||||||| |||||||||| | ||||||||||| |||||||||||| Sbjct 2220 AATTCCCCACTGCTGCCTCCTGTAGGAGTCTAGGTCGTGTCTCAGTCCCAGTGTGGCTGA 2279 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTA 188 ||||||||||| | |||||| |||| |||||| ||| || ||| || | ||||||| Sbjct 2280 TCATCCTCTCATAACAGCTATTGATCATCGCCTTGGTAAGCTATTGCCTCACCAACTA 2337 >seq80 Length=449916 Score = 104 bits (114), Expect = 6e-20 Identities = 130/185 (70%), Gaps = 24/185 (13%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||| || | | |||||||||| ||| | || ||||| ||||| ||| | || Sbjct 102182 ACCCGTGGGCCTACTACCTTCACGCGGCATTGCTCCGTCTGGCTTTCGCCCTTTGCGGAA 102241 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||| ||||| ||||||| | |||||||||| Sbjct 102242 AATTCCCCATTGCTG------------------------TCTCAGTCCTAGTGTGGCTGA 102277 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| || ||| ||| || ||| || | ||||||||| Sbjct 102278 TCATCCTCTCGGACCAGCTACTGATCATCACCTTGGTAAGCTATTGCCTCACCAACTAGC 102337 Query 191 TAATC 195 ||||| Sbjct 102338 TAATC 102342 >seq4842 Length=29583 Score = 82.4 bits (90), Expect = 2e-13 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 12 CCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAAT 71 |||| |||||||| | | |||||||||| ||| ||||||||| ||||||||| | || Sbjct 7948 CCCGTGGGCCTTCTACCTCCACGCGGCATTGCTCTATCAGGCTTTCGCCCATTGCGGAAA 7889 Query 72 ATTCCCCACTGCTGCCTC 89 ||||||||||||| |||| Sbjct 7888 ATTCCCCACTGCTACCTC 7871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222263115648