Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq2383 206 6e-51 seq80 156 1e-35 seq4940 96.9 8e-18 >seq2383 Length=69992 Score = 206 bits (228), Expect = 6e-51 Identities = 242/327 (74%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 19 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 78 ||||||||| ||||||||||| || |||| || ||| || ||||||||||| ||| | Sbjct 59507 CGGCTAACTCTGTGCCAGCAGCAGCAGTAAGACAGAGGATGCAAGCGTTATCCGAAATGA 59448 Query 79 CTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGGCTCAAC 138 ||||||||||| || |||| ||| | ||||||| | || ||| ||| |||||||| Sbjct 59447 TTGGGCGTAAAGCGTCTGTAGCTGGCCTTTTAAGTCCGCCGTCAAATCCTACGGCTCAAC 59388 Query 139 CCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAATTCCTAG 198 || | || | |||||| | ||| |||| | ||||||| |||||| | Sbjct 59387 CCTAGATAGGCGGTGGAAACTACCAAGCTGGAGTATGGTAGGGGCAGAGGGAATTTTCGG 59328 Query 199 TGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCTTGCTGGA 258 || |||||||||||||||||| || | |||||||| ||| || || |||||| Sbjct 59327 TGGAGCGGTGAAATGCGTAGAGATCGAAAAGAACACCAACGGCAAAAGCACTCTGCTGGG 59268 Query 259 CTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAG 318 | | | |||| |||| ||||||| |||||||||| |||||||||||||| |||| Sbjct 59267 CCGACAATGACTATGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGATACCCTAGTAG 59208 Query 319 TCCACGCCGTAAACGATGAATACTAGG 345 ||| ||||||||||||| |||||||| Sbjct 59207 TCCTAGCCGTAAACGATGGATACTAGG 59181 >seq80 Length=449916 Score = 156 bits (172), Expect = 1e-35 Identities = 280/404 (69%), Gaps = 4/404 (1%) Strand=Plus/Minus Query 7 AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGT 66 |||| |||| ||||||||| |||||||| || ||||| | ||| || ||||| Sbjct 102139 AGGAATAAGCATCGGCTAACTCTATGCCAGCAATCGTGGTAAGATAGAGGATGCAAGCGT 102080 Query 67 TATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGG 126 |||| |||| | ||||||||||| || ||||||| || | || || || ||| Sbjct 102079 TATCTAGAATGATTGGGCGTAAAGCGTCTATAGGTGGCTTTTAAACTCCACCGTCAAATC 102020 Query 127 CTATGGCTCAACCCCGGGACTG-CTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAA 185 | | || ||||||| || || | | | |||||| | | |||| | | | | || Sbjct 102019 CCAGGGATCAACCCTGG-ACAGACGATGGAAACTATTAAGTTGGAGTTCGGTATGAGCGT 101961 Query 186 GTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAG 245 | || | | ||| |||||| ||||||||||| || | | |||||||| | |||| Sbjct 101960 AGGAAAATTTTGGTGGAGCGGTTAAATGCGTAGAGATCGGAAAGAACACCAACGACGAAA 101901 Query 246 GCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTA 305 || ||| ||| | | ||| |||||||| | |||| |||||||||| | |||| Sbjct 101900 GCACTTTGTTGGGCCGACACTAACACTGAGAGACAAAAGATAGGGGAGCAAATTGTATTA 101841 Query 306 GATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGC 364 |||||||| ||| ||| ||| ||||||||| |||||| | | | ||| || || Sbjct 101840 GATACCCTAGTAATCCTAGCCATAAACGATGGATACTATGCG-ATGTGCGTATCAACCCG 101782 Query 365 TCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | || | ||| |||||| ||||||| |||||||||||||| Sbjct 101781 TGCAATGTTGTAGCTAACGCATTAAGTATCCCACCTGGGGAGTA 101738 >seq4940 Length=30588 Score = 96.9 bits (106), Expect = 8e-18 Identities = 166/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 108 TTAAGTCAGAGGTGAAAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCT 167 ||||||| | || ||| | |||||||||||| || | | |||||| | ||| Sbjct 2298 TTAAGTCCGCCGTCAAATCCCATGGCTCAACCCTGGACAGGAGATGGAAACTACTAAGCT 2239 Query 168 AGAGTGCAGGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGA 227 ||| || ||||||| |||||| |||||| ||||||||||| |||||| || | | Sbjct 2238 GAAGTACAATAGGGGCAGAGGGAATTTCTAGTGGAGCGGTGAAATACGTAGAGATCAAAA 2179 Query 228 GGAACACCAGTGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGT 287 ||||||||| ||||| || ||| | | | ||| |||| ||| ||||||| Sbjct 2178 AGAACACCAGCCGCGAAAGCACTCCGCTTGGCCGACACTATCACTCAGGGACGAAAGCTA 2119 Query 288 GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTG 347 |||| || || ||| | |||| | ||||| ||| ||||||| |||||||| | Sbjct 2118 GGGGGGCGAATGAGATCAAATACACCACTAGTCTTAATCGTTAACGATGGATACTAGGCG 2059 Query 348 T 348 | Sbjct 2058 T 2058 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203065265664