Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq2383 116 8e-24 seq8509 93.3 9e-17 >seq2383 Length=69992 Score = 116 bits (128), Expect = 8e-24 Identities = 146/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| | | |||| | ||||| ||| ||||| || | ||| |||| || Sbjct 59548 AAAAGAAGTTCATGACCCGTGGG-CCTTCTACCTCCACGCGACATTGCTTTGTCAGGCTT 59606 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| |||||| || ||||| ||||||||||||||||||||| ||| ||||||||||| Sbjct 59607 TCGCCCATTGCGGAAAATTCCCAACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAG 59666 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTT 260 | ||| ||||| || | ||||||| || | ||| ||| | | || ||| || || Sbjct 59667 TCCCAGTGTGGCTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTTGGTAAGCTATT 59726 Query 261 ACCCCGCCTACTACCTAAT 279 || | || |||| ||||| Sbjct 59727 GCCTCACCAACTAGCTAAT 59745 >seq8509 Length=4468 Score = 93.3 bits (102), Expect = 9e-17 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 133 TCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCG 192 |||| || ||| |||||| || ||||| ||||||||||||| |||||||| | | || Sbjct 2197 TCAGGCTTTCGCCCATTGCAAAAAATTCCCCACTGCTGCCTCCTGTAGGAGTCTAGGTCG 2256 Query 193 TGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGT 252 ||||||||| ||| ||||| || | |||||||| ||| |||| ||| | | || ||| Sbjct 2257 TGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCATAACAGCTATTGATCATCGCCTTGGT 2316 Query 253 GGGCCGTTACCCCGCCTACTA 273 || || || | || |||| Sbjct 2317 AAGCTATTGCCTCACCAACTA 2337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068680315776