Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq20 145 6e-30
seq63 91.5 1e-13
>seq20
Length=765589
Score = 145 bits (160), Expect = 6e-30
Identities = 548/846 (65%), Gaps = 23/846 (3%)
Strand=Plus/Plus
Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155
||||||||||| || |||||||| |||||||| | || || |||||| | || ||||
Sbjct 521627 ATGTACAAAAAAGCTGAAGCTTCATTCTGGACTGCCGAAGAAGTCGATCTTTCGCAAGAT 521686
Query 61156 ATGAATGACTGGG--AGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212
| | |||||| | | | ||| | | || ||||| |||||||| | || | |
Sbjct 521687 GTTCGTCACTGGGAAACCATCTTAACCACCGACGAACAGCATTTCATCACCCACATCCTC 521746
Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272
|| ||||| ||||| || ||||| ||||| |||||| | | | | ||| | ||
Sbjct 521747 GCCTTCTTCGCCGCATCAGACGGCATCGTTCTCGAGAATCTCGCCGGAAGATTCATGAAG 521806
Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332
||||| || || | || || || |||||| |||||||| || ||||| || || |
Sbjct 521807 GAGGTTCAGGTTGCTGAAGCTCGCGCTTTCTATGGCTTCCAAATCGCCATTGAAAACATT 521866
Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGT--G 61390
||||| || |||||| | |||| | || || ||||||| || | | | | |
Sbjct 521867 CACTCTGAAATGTACTCTCTTCTTTTAGAAACTTACATCAAAGA---TTCTAACCTTAAG 521923
Query 61391 AACGAT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC- 61448
| | || | || ||| || || || || || || ||| ||| || ||||||||
Sbjct 521924 ACCCATCTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGGCAGATTGGGCT 521983
Query 61449 CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGT 61508
|||| |||||| || | | | |||| ||| | ||| | || |||||
Sbjct 521984 CTTC-GTTGGATTGATGGT---GCTGAATCGTTTGCTGAGAGGTTGATTGCTTTTGCTTG 522039
Query 61509 GGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGG 61568
|| || || | || ||| |||| || | | ||||| ||| | || || |||||
Sbjct 522040 TGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCTCCATCTTCTGGCTCAAAAAGCGTGG 522099
Query 61569 ACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTG 61628
| ||||| ||| | |||||| || ||| ||||||| || ||||| || | || ||
Sbjct 522100 GTTAATGCCGGGTTTAACCTTCTCAAACGAGCTGATATCGCGAGACGAAGGGCTTCACTG 522159
Query 61629 TGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688
||||||||| |||||| || ||| ||| ||| | | | ||| ||
Sbjct 522160 TGATTTTGCCTGCCTGCTATACA---GCTTACTGAAGAAGAAGCTGAGTGTTGAGAAGGT 522216
Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748
| | ||| || || || || ||||| | || || | || || || | ||
Sbjct 522217 GCAGGGGATAGTAAAGGATGCAGTCGAAATCGAGCGAGAGTTCGTAACCGATGCGCTTCC 522276
Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808
|| || | || ||||| |||| || ||| ||||| ||||| |||||||| ||
Sbjct 522277 GGTGAAGCTGGTTGGGATGAACTGTGAGCTGATGAGCCAGTACATTGAGTTTGTTGCAGA 522336
Query 61809 CCGTCTGTTGG-TCGATTTGGGTATGAAGCGGATCTA--TAATACGAAAAACCCATTTGA 61865
| | ||||||| | | |||||| |||| || | || | | | | ||||| || ||
Sbjct 522337 CAGGCTGTTGGCTGCACTTGGGTGTGAAAAGG-TTTACGGAGTTC--AGAACCCGTTCGA 522393
Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925
|| ||||| |||| || || | || ||||| ||||| || ||||| | || || ||
Sbjct 522394 TTGGATGGAGTTGATCTCTCTTCAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGA 522453
Query 61926 CTATCA 61931
|||||
Sbjct 522454 GTATCA 522459
>seq63
Length=488123
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/185 (71%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136
||| || ||||||| ||| |||| |||||| || | ||||| | |||||||||||| ||
Sbjct 274395 ATCCACAGTGAACTTGATAGCATCAGCAGCTGCTCTTGTCCTTAAATAGTACATGCCTGT 274454
Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196
||| | || | ||| |||| ||| |||| || | ||| ||| | |||| || |
Sbjct 274455 CTTCAAACCCTTAGACCATGCATGGAAGTGCAGAGAGGTTAACTTTCCGAAATTGGGTTG 274514
Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256
| || || ||||| | ||||| ||||| ||| ||| || ||||| |||||||
Sbjct 274515 TGTCATGTGAATATTTAGGCTTTGACTTTGATCAATGAAACATCCTCGATCAACAGCCAT 274574
Query 65257 GTCAA 65261
||||
Sbjct 274575 ATCAA 274579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397513741658720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |