Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq20 145 6e-30 seq63 91.5 1e-13 >seq20 Length=765589 Score = 145 bits (160), Expect = 6e-30 Identities = 548/846 (65%), Gaps = 23/846 (3%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 ||||||||||| || |||||||| |||||||| | || || |||||| | || |||| Sbjct 521627 ATGTACAAAAAAGCTGAAGCTTCATTCTGGACTGCCGAAGAAGTCGATCTTTCGCAAGAT 521686 Query 61156 ATGAATGACTGGG--AGCGT-TTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTG 61212 | | |||||| | | | ||| | | || ||||| |||||||| | || | | Sbjct 521687 GTTCGTCACTGGGAAACCATCTTAACCACCGACGAACAGCATTTCATCACCCACATCCTC 521746 Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAG 61272 || ||||| ||||| || ||||| ||||| |||||| | | | | ||| | || Sbjct 521747 GCCTTCTTCGCCGCATCAGACGGCATCGTTCTCGAGAATCTCGCCGGAAGATTCATGAAG 521806 Query 61273 GAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTC 61332 ||||| || || | || || || |||||| |||||||| || ||||| || || | Sbjct 521807 GAGGTTCAGGTTGCTGAAGCTCGCGCTTTCTATGGCTTCCAAATCGCCATTGAAAACATT 521866 Query 61333 CACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGT--G 61390 ||||| || |||||| | |||| | || || ||||||| || | | | | | Sbjct 521867 CACTCTGAAATGTACTCTCTTCTTTTAGAAACTTACATCAAAGA---TTCTAACCTTAAG 521923 Query 61391 AACGAT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC- 61448 | | || | || ||| || || || || || || ||| ||| || |||||||| Sbjct 521924 ACCCATCTTTTTCGTGCAATTGAAACTATCCCTTGTGTTAAGAAGAAGGCAGATTGGGCT 521983 Query 61449 CTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGT 61508 |||| |||||| || | | | |||| ||| | ||| | || ||||| Sbjct 521984 CTTC-GTTGGATTGATGGT---GCTGAATCGTTTGCTGAGAGGTTGATTGCTTTTGCTTG 522039 Query 61509 GGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGG 61568 || || || | || ||| |||| || | | ||||| ||| | || || ||||| Sbjct 522040 TGTTGAAGGGATTTTCTTCTCTGGAAGTTTCTGCTCCATCTTCTGGCTCAAAAAGCGTGG 522099 Query 61569 ACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTG 61628 | ||||| ||| | |||||| || ||| ||||||| || ||||| || | || || Sbjct 522100 GTTAATGCCGGGTTTAACCTTCTCAAACGAGCTGATATCGCGAGACGAAGGGCTTCACTG 522159 Query 61629 TGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGT 61688 ||||||||| |||||| || ||| ||| ||| | | | ||| || Sbjct 522160 TGATTTTGCCTGCCTGCTATACA---GCTTACTGAAGAAGAAGCTGAGTGTTGAGAAGGT 522216 Query 61689 GGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCC 61748 | | ||| || || || || ||||| | || || | || || || | || Sbjct 522217 GCAGGGGATAGTAAAGGATGCAGTCGAAATCGAGCGAGAGTTCGTAACCGATGCGCTTCC 522276 Query 61749 CGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 || || | || ||||| |||| || ||| ||||| ||||| |||||||| || Sbjct 522277 GGTGAAGCTGGTTGGGATGAACTGTGAGCTGATGAGCCAGTACATTGAGTTTGTTGCAGA 522336 Query 61809 CCGTCTGTTGG-TCGATTTGGGTATGAAGCGGATCTA--TAATACGAAAAACCCATTTGA 61865 | | ||||||| | | |||||| |||| || | || | | | | ||||| || || Sbjct 522337 CAGGCTGTTGGCTGCACTTGGGTGTGAAAAGG-TTTACGGAGTTC--AGAACCCGTTCGA 522393 Query 61866 TTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGA 61925 || ||||| |||| || || | || ||||| ||||| || ||||| | || || || Sbjct 522394 TTGGATGGAGTTGATCTCTCTTCAAGGGAAGACTAATTTCTTTGAGAAGAGAGTTGGGGA 522453 Query 61926 CTATCA 61931 ||||| Sbjct 522454 GTATCA 522459 >seq63 Length=488123 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 65077 ATCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGT 65136 ||| || ||||||| ||| |||| |||||| || | ||||| | |||||||||||| || Sbjct 274395 ATCCACAGTGAACTTGATAGCATCAGCAGCTGCTCTTGTCCTTAAATAGTACATGCCTGT 274454 Query 65137 CTTGAGGCCAGCACGCCAAGCATAGAAATGCATCGATGATAATTTTGCATAATTCGGCTC 65196 ||| | || | ||| |||| ||| |||| || | ||| ||| | |||| || | Sbjct 274455 CTTCAAACCCTTAGACCATGCATGGAAGTGCAGAGAGGTTAACTTTCCGAAATTGGGTTG 274514 Query 65197 GGCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCAT 65256 | || || ||||| | ||||| ||||| ||| ||| || ||||| ||||||| Sbjct 274515 TGTCATGTGAATATTTAGGCTTTGACTTTGATCAATGAAACATCCTCGATCAACAGCCAT 274574 Query 65257 GTCAA 65261 |||| Sbjct 274575 ATCAA 274579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397513741658720