Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18] 11,198 sequences; 536,949,264 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq814 98.7 1e-15 seq220 84.2 2e-11 >seq814 Length=133700 Score = 98.7 bits (108), Expect = 1e-15 Identities = 96/123 (78%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 160496 ATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAAC 160555 ||||| || || ||||| || |||||| | |||||||| |||||||| || |||||| Sbjct 56304 ATCGTAGCTGCTCATGGTTATTTCGGTTGATTGATCTTTCAATATGCTAGTTTCAACAAC 56245 Query 160556 TCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCC 160615 || | ||| | ||||||||| | |||||||||||||| || || || ||||| || || Sbjct 56244 TCTTGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTAC--CC 56187 Query 160616 CTT 160618 ||| Sbjct 56186 CTT 56184 >seq220 Length=268034 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/186 (70%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 160978 GACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGCTCT 161037 || |||||||| || | ||| |||| || ||||| ||| | ||||| | ||||| Sbjct 141972 GATGCTGCTGAAGAGGTAGGGATTGATTTGCCTTACTCTTGTAGGGCTGGCTCGTGCTCC 142031 Query 161038 ACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCCTGGAT 161097 | || || |||||| || | ||||||| | || || ||||||||||| ||| | ||| Sbjct 142032 TCATGCGCCGGTAAGCTTACGTCTGGTACTCTTGACCAGTCTGATCAATCCTTCTTAGAT 142091 Query 161098 GATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGATGTA 161157 ||||| || ||| | |||| || || || || | |||||| || | |||||| Sbjct 142092 GATGACCAGATTGCTGCTGGATGGGTTCTTACTTGTGCTGCTTACCCTGTTAGTGATGTT 142151 Query 161158 ACTATT 161163 || ||| Sbjct 142152 ACCATT 142157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551298821144400