Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Chenopodium_20suecicum_20[genbank_20GCA_5F001687025.1_202016-07-18]
11,198 sequences; 536,949,264 total letters
Query= NC_031903.1
Length=172345
Score E
Sequences producing significant alignments: (Bits) Value
seq814 98.7 1e-15
seq220 84.2 2e-11
>seq814
Length=133700
Score = 98.7 bits (108), Expect = 1e-15
Identities = 96/123 (78%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 160496 ATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAAC 160555
||||| || || ||||| || |||||| | |||||||| |||||||| || ||||||
Sbjct 56304 ATCGTAGCTGCTCATGGTTATTTCGGTTGATTGATCTTTCAATATGCTAGTTTCAACAAC 56245
Query 160556 TCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCC 160615
|| | ||| | ||||||||| | |||||||||||||| || || || ||||| || ||
Sbjct 56244 TCTTGTTCTTTACACTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTAC--CC 56187
Query 160616 CTT 160618
|||
Sbjct 56186 CTT 56184
>seq220
Length=268034
Score = 84.2 bits (92), Expect = 2e-11
Identities = 130/186 (70%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 160978 GACGCTGCTGATGAAGCAGGTGTTGACGGACCCTACTCCTGTCGTGCTGGTGCTTGCTCT 161037
|| |||||||| || | ||| |||| || ||||| ||| | ||||| | |||||
Sbjct 141972 GATGCTGCTGAAGAGGTAGGGATTGATTTGCCTTACTCTTGTAGGGCTGGCTCGTGCTCC 142031
Query 161038 ACTTGTGCTGGTAAGATTGAGAGTGGTACTGTAGATCAATCTGATCAATCTTTCCTGGAT 161097
| || || |||||| || | ||||||| | || || ||||||||||| ||| | |||
Sbjct 142032 TCATGCGCCGGTAAGCTTACGTCTGGTACTCTTGACCAGTCTGATCAATCCTTCTTAGAT 142091
Query 161098 GATGATCAACTTGAATCAGGATTTGTCCTGACCTGCGTTGCTTATCCCACTTCTGATGTA 161157
||||| || ||| | |||| || || || || | |||||| || | ||||||
Sbjct 142092 GATGACCAGATTGCTGCTGGATGGGTTCTTACTTGTGCTGCTTACCCTGTTAGTGATGTT 142151
Query 161158 ACTATT 161163
|| |||
Sbjct 142152 ACCATT 142157
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 551298821144400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |