Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq21713 235 1e-59 seq9766 235 1e-59 seq680 167 4e-39 seq15106 95.1 2e-17 seq3172 87.8 3e-15 >seq21713 Length=4003 Score = 235 bits (260), Expect = 1e-59 Identities = 245/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Minus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||| ||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 2680 CCGGTCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 2621 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 2620 CTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 2561 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | || | ||||| |||||| | ||| || Sbjct 2560 ATTAGCATGGGATAACATCATAGGATTT-CGATCCTATTCTGTTGGCCTTCGGGATCGGA 2502 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 2501 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 2442 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 2441 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 2383 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 2382 GAACGAAAGTTGGGGG 2367 >seq9766 Length=43015 Score = 235 bits (260), Expect = 1e-59 Identities = 245/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||| ||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 37449 CCGGTCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 37508 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 37509 CTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 37568 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | || | ||||| |||||| | ||| || Sbjct 37569 ATTAGCATGGGATAACATCATAGGATTT-CGATCCTATTCTGTTGGCCTTCGGGATCGGA 37627 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 37628 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 37687 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 37688 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 37746 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 37747 GAACGAAAGTTGGGGG 37762 >seq680 Length=9511 Score = 167 bits (184), Expect = 4e-39 Identities = 185/243 (76%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130 || |||||||||| ||||||||| | |||||||| |||| ||| | |||||||||||| Sbjct 8586 CTGTTACTTTGAAGAAATTAGAGCGCTCAAAGCAAGCCTACACTCTATATACATTAGCAT 8527 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 | |||| | |||||| | || | | ||| |||||| | ||| | |||| ||| Sbjct 8526 GAGATAACATCATAGGATTT-CGATCCCATTCTGTTGGCCTTCGGGATTGGAGTAAGGAT 8468 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| || || ||| | ||| | ||||| || || |||||| |||||||||||||||| Sbjct 8467 TAACAGAGAGAGTTGTGGGCATTTGTATTTCATAGTTAGAGGTAAAATTCTTGGATTTAT 8408 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 |||| ||| ||||||||||| || ||||| |||||||||||||| | |||||||| Sbjct 8407 GAAAGATGAACAACTGCGAAAGCATTTGCCAAGTATGTTTTCATTAATGA-AGAACGAAA 8349 Query 311 GTT 313 ||| Sbjct 8348 GTT 8346 >seq15106 Length=39787 Score = 95.1 bits (104), Expect = 2e-17 Identities = 106/138 (77%), Gaps = 8/138 (6%) Strand=Plus/Plus Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 ||||||| ||||||||||||| | || | ||||| || ||||||||||||||||||| Sbjct 25497 TAATGATGAATAGGGATAGTCAGTAGTATTTGTATTTCATAGTCAGAGGTGAAATTCTTG 25556 Query 244 GATTTATTGAAGAC---TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||| ||||| |||||| | ||| || |||| |||| |||||||||||| Sbjct 25557 ACTTTATGAAAGACGAGTAACTAGAG---AAGTATTTGCCAAAGATGGTTTCATTAATCA 25613 Query 301 GTGAACGAAAGTT-AGGG 317 |||||| |||| |||| Sbjct 25614 -AGAACGATAGTTGAGGG 25630 >seq3172 Length=9394 Score = 87.8 bits (96), Expect = 3e-15 Identities = 91/118 (77%), Gaps = 1/118 (1%) Strand=Plus/Plus Query 201 AGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260 |||| |||| | ||||| || || | |||| ||||| || ||||||| ||||| || Sbjct 8530 AGTCTGGGGCATTCGTATTTCATAGTTAAAGGTTAAATTTTTAGATTTATGAAAGACAAA 8589 Query 261 CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 | ||| ||||| | || | || ||||||||||||||||| | |||||||||| |||| Sbjct 8590 CAACTACGAAAACATTTTCTAATGATGTTTTCATTAATCAAT-AACGAAAGTTGGGGG 8646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914831650304