Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq21713 235 1e-59
seq9766 235 1e-59
seq680 167 4e-39
seq15106 95.1 2e-17
seq3172 87.8 3e-15
>seq21713
Length=4003
Score = 235 bits (260), Expect = 1e-59
Identities = 245/316 (78%), Gaps = 8/316 (3%)
Strand=Plus/Minus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
|||| ||| | | ||||||| | ||| ||| || |||| ||||| | | || |
Sbjct 2680 CCGGTCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 2621
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | || |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 2620 CTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 2561
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | || | ||||| |||||| | ||| ||
Sbjct 2560 ATTAGCATGGGATAACATCATAGGATTT-CGATCCTATTCTGTTGGCCTTCGGGATCGGA 2502
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 2501 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 2442
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 2441 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 2383
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 2382 GAACGAAAGTTGGGGG 2367
>seq9766
Length=43015
Score = 235 bits (260), Expect = 1e-59
Identities = 245/316 (78%), Gaps = 8/316 (3%)
Strand=Plus/Plus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
|||| ||| | | ||||||| | ||| ||| || |||| ||||| | | || |
Sbjct 37449 CCGGTCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 37508
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | || |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 37509 CTCCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 37568
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | || | ||||| |||||| | ||| ||
Sbjct 37569 ATTAGCATGGGATAACATCATAGGATTT-CGATCCTATTCTGTTGGCCTTCGGGATCGGA 37627
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 37628 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 37687
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 37688 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 37746
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 37747 GAACGAAAGTTGGGGG 37762
>seq680
Length=9511
Score = 167 bits (184), Expect = 4e-39
Identities = 185/243 (76%), Gaps = 3/243 (1%)
Strand=Plus/Minus
Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130
|| |||||||||| ||||||||| | |||||||| |||| ||| | ||||||||||||
Sbjct 8586 CTGTTACTTTGAAGAAATTAGAGCGCTCAAAGCAAGCCTACACTCTATATACATTAGCAT 8527
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
| |||| | |||||| | || | | ||| |||||| | ||| | |||| |||
Sbjct 8526 GAGATAACATCATAGGATTT-CGATCCCATTCTGTTGGCCTTCGGGATTGGAGTAAGGAT 8468
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| || || ||| | ||| | ||||| || || |||||| ||||||||||||||||
Sbjct 8467 TAACAGAGAGAGTTGTGGGCATTTGTATTTCATAGTTAGAGGTAAAATTCTTGGATTTAT 8408
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
|||| ||| ||||||||||| || ||||| |||||||||||||| | ||||||||
Sbjct 8407 GAAAGATGAACAACTGCGAAAGCATTTGCCAAGTATGTTTTCATTAATGA-AGAACGAAA 8349
Query 311 GTT 313
|||
Sbjct 8348 GTT 8346
>seq15106
Length=39787
Score = 95.1 bits (104), Expect = 2e-17
Identities = 106/138 (77%), Gaps = 8/138 (6%)
Strand=Plus/Plus
Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243
||||||| ||||||||||||| | || | ||||| || |||||||||||||||||||
Sbjct 25497 TAATGATGAATAGGGATAGTCAGTAGTATTTGTATTTCATAGTCAGAGGTGAAATTCTTG 25556
Query 244 GATTTATTGAAGAC---TAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300
||||| ||||| |||||| | ||| || |||| |||| ||||||||||||
Sbjct 25557 ACTTTATGAAAGACGAGTAACTAGAG---AAGTATTTGCCAAAGATGGTTTCATTAATCA 25613
Query 301 GTGAACGAAAGTT-AGGG 317
|||||| |||| ||||
Sbjct 25614 -AGAACGATAGTTGAGGG 25630
>seq3172
Length=9394
Score = 87.8 bits (96), Expect = 3e-15
Identities = 91/118 (77%), Gaps = 1/118 (1%)
Strand=Plus/Plus
Query 201 AGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAA 260
|||| |||| | ||||| || || | |||| ||||| || ||||||| ||||| ||
Sbjct 8530 AGTCTGGGGCATTCGTATTTCATAGTTAAAGGTTAAATTTTTAGATTTATGAAAGACAAA 8589
Query 261 CTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
| ||| ||||| | || | || ||||||||||||||||| | |||||||||| ||||
Sbjct 8590 CAACTACGAAAACATTTTCTAATGATGTTTTCATTAATCAAT-AACGAAAGTTGGGGG 8646
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 914831650304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |