Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq9766 233 8e-59
seq5631 233 8e-59
seq21713 190 9e-46
seq23712 111 7e-22
seq19894 102 3e-19
seq4998 102 3e-19
seq32606 80.6 1e-12
>seq9766
Length=43015
Score = 233 bits (258), Expect = 8e-59
Identities = 225/283 (80%), Gaps = 7/283 (2%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|| ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | |
Sbjct 39846 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTTAACGGGCGAGTA 39905
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520
||||||| | || || ||| ||| || ||||| ||| | | |||| |||||| ||
Sbjct 39906 AACCCGTAAGGCGCAAGGAAGCTGACTGG---TGGGATCCCCTAGTGGGTTGCACCACCG 39962
Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580
||||| | |||| | | || || || |||| |||||| |||| |||||||||||||
Sbjct 39963 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGA 40022
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640
||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||
Sbjct 40023 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 40082
Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| ||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 40083 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 40125
Score = 158 bits (174), Expect = 5e-36
Identities = 134/165 (81%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
|| |||||||| |||||||||||||||||| | || ||| |||||||| || || ||
Sbjct 39459 TCAACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCTGTCCAAGGC 39518
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
||||||| ||| ||||||||||||| ||||||| | || ||||||||||||| ||||
Sbjct 39519 TAAATATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 39578
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 39579 TGAAAAGAGAGTCAAATAGTGCTTGAAATTGTCGGGAGGGAAGCG 39623
>seq5631
Length=4661
Score = 233 bits (258), Expect = 8e-59
Identities = 225/283 (80%), Gaps = 7/283 (2%)
Strand=Plus/Plus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|| ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | |
Sbjct 1803 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTTAACGGGCGAGTA 1862
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520
||||||| | || || ||| ||| || ||||| ||| | | |||| |||||| ||
Sbjct 1863 AACCCGTAAGGCGCAAGGAAGCTGACTGG---TGGGATCCCCTAGTGGGTTGCACCACCG 1919
Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580
||||| | |||| | | || || || |||| |||||| |||| |||||||||||||
Sbjct 1920 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGA 1979
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640
||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||
Sbjct 1980 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 2039
Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| ||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 2040 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 2082
Score = 158 bits (174), Expect = 5e-36
Identities = 134/165 (81%), Gaps = 0/165 (0%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94
|| |||||||| |||||||||||||||||| | || ||| |||||||| || || ||
Sbjct 1416 TCAACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCTGTCCAAGGC 1475
Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154
||||||| ||| ||||||||||||| ||||||| | || ||||||||||||| ||||
Sbjct 1476 TAAATATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 1535
Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 1536 TGAAAAGAGAGTCAAATAGTGCTTGAAATTGTCGGGAGGGAAGCG 1580
>seq21713
Length=4003
Score = 190 bits (210), Expect = 9e-46
Identities = 218/286 (76%), Gaps = 13/286 (5%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463
|| ||| ||||| |||| |||||||||||| | |||| | ||||||| ||| | |
Sbjct 318 CGACCCATCTTGAAACATGGACCAAGGAGTTTGACATGTGTGCGAGTTAACGGGCGAGTA 259
Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520
||||||| | || || ||| ||| || ||||| ||| | | |||| |||||| ||
Sbjct 258 AACCCGTAAGGCGCAAGGAAGCTGACTGG---TGGGATCCCCTAGTGGGTTGCACCACCG 202
Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580
||||| | |||| | | || || || |||| |||||| |||| ||||||| |||||
Sbjct 201 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCAAAAGA 142
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640
||||||||||||||||| ||| ||||||||||||||||||||||||||| || ||||
Sbjct 141 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGAAGCGA 82
Query 641 TTCTGGCGTGCAAATCGATCGTCAA---ATTTGGGTATAGGGGCGA 683
| ||| |||||||||| || || |||||||||||||||||
Sbjct 81 TACTGACGTGCAAATC---CGAGAAGTGTTTTGGGTATAGGGGCGA 39
Score = 152 bits (168), Expect = 2e-34
Identities = 135/166 (81%), Gaps = 2/166 (1%)
Strand=Plus/Minus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG-GGAGGTAAATTTCTTCTAAAG 93
|| |||||||| |||||||||||||||||| || ||| || |||||||| || || |
Sbjct 705 TCAACGAGTCGGGTTGTTTGGGAATGCAGC-CTCAATCAGGCGGTAAATTCTGTCCAAGG 647
Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153
|||||||| ||| ||||||||||||| ||||||| | || ||||||||||||| |||
Sbjct 646 CTAAATATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACT 587
Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
||| ||||||||| ||| || | ||||||||| | |||||||||
Sbjct 586 TTGAAAAGAGAGTCAAATAGTGCTTGAAATTGTCGGGAGGGAAGCG 541
>seq23712
Length=9989
Score = 111 bits (122), Expect = 7e-22
Identities = 145/195 (74%), Gaps = 7/195 (4%)
Strand=Plus/Minus
Query 493 GGTGGGAACCCGT-GAGGGT-GCACCATCGACCGATCCTGATGTCTTCG--GATGGATTT 548
||||||| ||| | | |||| |||||| || ||| | | || |||| || || ||
Sbjct 4512 GGTGGGATCCCCTTGTGGGTTGCACCACTGATCGACCTTCAT--CTTCAAAGAAGGGTTC 4455
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
|||| |||||| |||| |||||| |||||| ||||||||||||||| ||| ||||
Sbjct 4454 GAGTGTGAGCATGCCTGTACGGACCCAAAAGATAGTGAACTATGCCTGAGCGGGGCGAAG 4395
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||| ||||| ||||||||| ||| || | || |||| ||| | |||| | |
Sbjct 4394 CCAGAGGATACTCTAGTGGAGGCTTGCAACGATGTTGACGTGTAAACCATTCGTTTGACT 4335
Query 669 TGGGTATAGGGGCGA 683
| | |||||||| ||
Sbjct 4334 T-GTTATAGGGGTGA 4321
>seq19894
Length=11417
Score = 102 bits (112), Expect = 3e-19
Identities = 116/153 (76%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAG 93
|| |||||||| ||||||||||||| || | || ||| || | |||||| || || |
Sbjct 1831 TCAACGAGTCGGGTTGTTTGGGAATACAAC-CTCAATCAGGCGAAAAATTTTGTCCAAGG 1889
Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153
|||||||| || ||||| |||||| ||||||| | || ||||| |||||| |||
Sbjct 1890 CTAAATATGGGTGAGAGATTGATAGCAAACAAGTATCGCGAGGAAAAGAAGAAAAGAACT 1949
Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGT 186
||| ||||||| | ||| || | |||||||||
Sbjct 1950 TTGAAAAGAGAATCAAATAGTGCTTGAAATTGT 1982
>seq4998
Length=12768
Score = 102 bits (112), Expect = 3e-19
Identities = 116/153 (76%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAG 93
|| |||||||| ||||||||||||| || | || ||| || | |||||| || || |
Sbjct 433 TCAACGAGTCGGGTTGTTTGGGAATACAAC-CTCAATCAGGCGAAAAATTTTGTCCAAGG 491
Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153
|||||||| || ||||| |||||| ||||||| | || ||||| |||||| |||
Sbjct 492 CTAAATATGGGTGAGAGATTGATAGCAAACAAGTATCGCGAGGAAAAGAAGAAAAGAACT 551
Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGT 186
||| ||||||| | ||| || | |||||||||
Sbjct 552 TTGAAAAGAGAATCAAATAGTGCTTGAAATTGT 584
>seq32606
Length=49254
Score = 80.6 bits (88), Expect = 1e-12
Identities = 76/96 (79%), Gaps = 1/96 (1%)
Strand=Plus/Minus
Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157
|||| ||| ||||| |||||| ||||||| ||| |||||||||||| ||||||
Sbjct 26889 ATATAGGCAAGAGATTGATAGCAAACAAGTACCATGAGAGAAAGATGAAAAAAACTTTGA 26830
Query 158 AAAGAGAGTTAAAA-AGCACGTGAAATTGTTGAAAG 192
||||||||| |||| || | ||||||||||| |||
Sbjct 26829 AAAGAGAGTCAAAACAGTGCTTGAAATTGTTGGAAG 26794
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079136680400
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