Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq9766 233 8e-59 seq5631 233 8e-59 seq21713 190 9e-46 seq23712 111 7e-22 seq19894 102 3e-19 seq4998 102 3e-19 seq32606 80.6 1e-12 >seq9766 Length=43015 Score = 233 bits (258), Expect = 8e-59 Identities = 225/283 (80%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 39846 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTTAACGGGCGAGTA 39905 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 ||||||| | || || ||| ||| || ||||| ||| | | |||| |||||| || Sbjct 39906 AACCCGTAAGGCGCAAGGAAGCTGACTGG---TGGGATCCCCTAGTGGGTTGCACCACCG 39962 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| |||||| |||| ||||||||||||| Sbjct 39963 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGA 40022 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 40023 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 40082 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 40083 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 40125 Score = 158 bits (174), Expect = 5e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| || || || Sbjct 39459 TCAACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCTGTCCAAGGC 39518 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| ||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 39519 TAAATATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 39578 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 39579 TGAAAAGAGAGTCAAATAGTGCTTGAAATTGTCGGGAGGGAAGCG 39623 >seq5631 Length=4661 Score = 233 bits (258), Expect = 8e-59 Identities = 225/283 (80%), Gaps = 7/283 (2%) Strand=Plus/Plus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 1803 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTTAACGGGCGAGTA 1862 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 ||||||| | || || ||| ||| || ||||| ||| | | |||| |||||| || Sbjct 1863 AACCCGTAAGGCGCAAGGAAGCTGACTGG---TGGGATCCCCTAGTGGGTTGCACCACCG 1919 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| |||||| |||| ||||||||||||| Sbjct 1920 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGA 1979 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||| Sbjct 1980 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 2039 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 2040 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 2082 Score = 158 bits (174), Expect = 5e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 || |||||||| |||||||||||||||||| | || ||| |||||||| || || || Sbjct 1416 TCAACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCTGTCCAAGGC 1475 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||| ||| ||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 1476 TAAATATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 1535 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 1536 TGAAAAGAGAGTCAAATAGTGCTTGAAATTGTCGGGAGGGAAGCG 1580 >seq21713 Length=4003 Score = 190 bits (210), Expect = 9e-46 Identities = 218/286 (76%), Gaps = 13/286 (5%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||| ||||| |||| |||||||||||| | |||| | ||||||| ||| | | Sbjct 318 CGACCCATCTTGAAACATGGACCAAGGAGTTTGACATGTGTGCGAGTTAACGGGCGAGTA 259 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACCCGT-GAGGGT-GCACCATCG 520 ||||||| | || || ||| ||| || ||||| ||| | | |||| |||||| || Sbjct 258 AACCCGTAAGGCGCAAGGAAGCTGACTGG---TGGGATCCCCTAGTGGGTTGCACCACCG 202 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| | |||| | | || || || |||| |||||| |||| ||||||| ||||| Sbjct 201 ACCGACCTTGATCTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCAAAAGA 142 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||| Sbjct 141 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGAAGCGA 82 Query 641 TTCTGGCGTGCAAATCGATCGTCAA---ATTTGGGTATAGGGGCGA 683 | ||| |||||||||| || || ||||||||||||||||| Sbjct 81 TACTGACGTGCAAATC---CGAGAAGTGTTTTGGGTATAGGGGCGA 39 Score = 152 bits (168), Expect = 2e-34 Identities = 135/166 (81%), Gaps = 2/166 (1%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATG-GGAGGTAAATTTCTTCTAAAG 93 || |||||||| |||||||||||||||||| || ||| || |||||||| || || | Sbjct 705 TCAACGAGTCGGGTTGTTTGGGAATGCAGC-CTCAATCAGGCGGTAAATTCTGTCCAAGG 647 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||| ||| ||||||||||||| ||||||| | || ||||||||||||| ||| Sbjct 646 CTAAATATGGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACT 587 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||| ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 586 TTGAAAAGAGAGTCAAATAGTGCTTGAAATTGTCGGGAGGGAAGCG 541 >seq23712 Length=9989 Score = 111 bits (122), Expect = 7e-22 Identities = 145/195 (74%), Gaps = 7/195 (4%) Strand=Plus/Minus Query 493 GGTGGGAACCCGT-GAGGGT-GCACCATCGACCGATCCTGATGTCTTCG--GATGGATTT 548 ||||||| ||| | | |||| |||||| || ||| | | || |||| || || || Sbjct 4512 GGTGGGATCCCCTTGTGGGTTGCACCACTGATCGACCTTCAT--CTTCAAAGAAGGGTTC 4455 Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 |||| |||||| |||| |||||| |||||| ||||||||||||||| ||| |||| Sbjct 4454 GAGTGTGAGCATGCCTGTACGGACCCAAAAGATAGTGAACTATGCCTGAGCGGGGCGAAG 4395 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||| ||||| ||||||||| ||| || | || |||| ||| | |||| | | Sbjct 4394 CCAGAGGATACTCTAGTGGAGGCTTGCAACGATGTTGACGTGTAAACCATTCGTTTGACT 4335 Query 669 TGGGTATAGGGGCGA 683 | | |||||||| || Sbjct 4334 T-GTTATAGGGGTGA 4321 >seq19894 Length=11417 Score = 102 bits (112), Expect = 3e-19 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAG 93 || |||||||| ||||||||||||| || | || ||| || | |||||| || || | Sbjct 1831 TCAACGAGTCGGGTTGTTTGGGAATACAAC-CTCAATCAGGCGAAAAATTTTGTCCAAGG 1889 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||| || ||||| |||||| ||||||| | || ||||| |||||| ||| Sbjct 1890 CTAAATATGGGTGAGAGATTGATAGCAAACAAGTATCGCGAGGAAAAGAAGAAAAGAACT 1949 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGT 186 ||| ||||||| | ||| || | ||||||||| Sbjct 1950 TTGAAAAGAGAATCAAATAGTGCTTGAAATTGT 1982 >seq4998 Length=12768 Score = 102 bits (112), Expect = 3e-19 Identities = 116/153 (76%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAAT-GGGAGGTAAATTTCTTCTAAAG 93 || |||||||| ||||||||||||| || | || ||| || | |||||| || || | Sbjct 433 TCAACGAGTCGGGTTGTTTGGGAATACAAC-CTCAATCAGGCGAAAAATTTTGTCCAAGG 491 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||| || ||||| |||||| ||||||| | || ||||| |||||| ||| Sbjct 492 CTAAATATGGGTGAGAGATTGATAGCAAACAAGTATCGCGAGGAAAAGAAGAAAAGAACT 551 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGT 186 ||| ||||||| | ||| || | ||||||||| Sbjct 552 TTGAAAAGAGAATCAAATAGTGCTTGAAATTGT 584 >seq32606 Length=49254 Score = 80.6 bits (88), Expect = 1e-12 Identities = 76/96 (79%), Gaps = 1/96 (1%) Strand=Plus/Minus Query 98 ATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 |||| ||| ||||| |||||| ||||||| ||| |||||||||||| |||||| Sbjct 26889 ATATAGGCAAGAGATTGATAGCAAACAAGTACCATGAGAGAAAGATGAAAAAAACTTTGA 26830 Query 158 AAAGAGAGTTAAAA-AGCACGTGAAATTGTTGAAAG 192 ||||||||| |||| || | ||||||||||| ||| Sbjct 26829 AAAGAGAGTCAAAACAGTGCTTGAAATTGTTGGAAG 26794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079136680400