Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq22748 141 1e-31 seq1391 96.9 5e-18 seq17896 89.7 7e-16 seq17463 87.8 2e-15 seq28133 84.2 3e-14 seq15441 80.6 4e-13 >seq22748 Length=18834 Score = 141 bits (156), Expect = 1e-31 Identities = 177/243 (73%), Gaps = 20/243 (8%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 13230 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 13288 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 13289 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 13335 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 13336 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 13389 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 || | |||| | || | ||| ||||||||||||| |||||||||||||||| | Sbjct 13390 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGG 13449 Query 246 GTA 248 ||| Sbjct 13450 GTA 13452 Score = 114 bits (126), Expect = 2e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 |||||||||||||||||||||||||||| |||||||||| ||||||| | |||| | Sbjct 15300 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 15359 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || | ||| ||||||||||||| |||||||||||||||| |||| Sbjct 15360 CGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTTCGGGTA 15407 >seq1391 Length=23006 Score = 96.9 bits (106), Expect = 5e-18 Identities = 169/248 (68%), Gaps = 20/248 (8%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||| |||||||||||| | |||||| | ||||| | ||| Sbjct 4888 CTTAACCTTCCAGCACTGGGCAGGCGTCAACCACCATACATGGTCTTAC-GACTTTATGG 4946 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||| ||||||||| ||||||||| || ||| || || |||| || Sbjct 4947 AGACTTGTGTTTTTGGTAAACAGTTGCCCAGGCCTAGTCACTAGGACCCCCT-------- 4998 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || |||| ||| ||||||||||||||||| |||| |||||||||| Sbjct 4999 --------TTGTGAGGCAG---CACTCCTTCTCCCGAAGTTACAGGGCTATTTTGCCGAG 5047 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | | || | | | ||| ||||||||||||| |||||||||||||| Sbjct 5048 TTCCTTAGAGAGAATTGTCTCACGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGT 5107 Query 241 TTACGGTA 248 || |||| Sbjct 5108 TTCGGGTA 5115 >seq17896 Length=32685 Score = 89.7 bits (98), Expect = 7e-16 Identities = 123/174 (71%), Gaps = 20/174 (11%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | |||| || ||| || |||| Sbjct 26223 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTA-CGACTTTGCGGAGACC 26165 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||| ||| | | Sbjct 26164 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCAACC-------------CCCT 26118 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGA 179 | || | | |||||||||||||||||||||||||||| |||||||||| Sbjct 26117 TTGT------GAGGAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGA 26070 >seq17463 Length=17885 Score = 87.8 bits (96), Expect = 2e-15 Identities = 162/235 (69%), Gaps = 22/235 (9%) Strand=Plus/Plus Query 14 CACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTT 73 ||| ||||||||||| |||| |||||| | ||||| | ||| || |||||||||||| Sbjct 6089 CACTGGGCAGGCGTCCGTCCCCATACATGGTCTTAC-GACTTTGCGAAGACCTGTGTTTT 6147 Query 74 TAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCAC 133 | |||||||||| | | | || || ||||| | | | || Sbjct 6148 T-GTAAACAGTCACCTGAGCTTGGTCACTACGACC-------------CTCTTTGTG--- 6190 Query 134 CAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACA 193 || || |||||| ||||| | ||||||||||| ||||||| | ||||||| | | Sbjct 6191 -AGGAG--GCACCC-TTCTCACAAAGTTACGGGGTTTTTTTGCCAAGTTCCTTAGAGAGA 6246 Query 194 GTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| | | || ||| ||||||||||||| ||||||||||| |||| |||| Sbjct 6247 GTTGTCTGGCACCCCTAGGTATTCTCTACCTACCCACCTGTGTCAGTTTTAGGTA 6301 >seq28133 Length=97125 Score = 84.2 bits (92), Expect = 3e-14 Identities = 80/101 (79%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 148 CTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACGC 207 ||||||||||||||| ||||| |||||| ||| ||||||| | |||| ||| | | Sbjct 90668 CTTCTCCCGAAGTTATGGGGCTATTTTGTCGAGTTCCTTAGAGAGAGTT-GTCCGCGCCC 90610 Query 208 CTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 || ||||||||||||| |||| ||||||||||| |||| Sbjct 90609 CTAGGTATTCTCTACCTACCCACATGTGTCGGTTTCGGGTA 90569 >seq15441 Length=46865 Score = 80.6 bits (88), Expect = 4e-13 Identities = 83/107 (78%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||||||| |||||| ||| ||||| | ||| || | Sbjct 5243 GCACCCCTTCTCCCGAAGTTACGGGGTCATTTTCCCGCGCTCCTTCGCAACA---CA-TC 5298 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 | |||| |||||| |||||| || ||||||||| | ||| |||| Sbjct 5299 TAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTGGATTTGGGGTA 5345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694129251704