Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq9766 412 6e-113
seq9767 408 7e-112
seq5631 408 7e-112
seq21710 183 5e-44
seq23295 118 2e-24
>seq9766
Length=43015
Score = 412 bits (456), Expect = 6e-113
Identities = 268/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||||
Sbjct 42229 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 42171
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 42170 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 42111
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 42110 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 42051
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 42050 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 41991
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || |||||||||||||||||||| |||||| |||| ||||||
Sbjct 41990 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 41938
>seq9767
Length=3674
Score = 408 bits (452), Expect = 7e-112
Identities = 267/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||||
Sbjct 1935 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1877
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 1876 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 1817
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1816 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 1757
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1756 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 1697
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || |||||||||||||||| ||| ||| ||||||| ||||||
Sbjct 1696 CAAATTCCGAAGGTCTAAAGGATCGATAGGGCACGCTTCCATGGTTGGTATTC 1644
>seq5631
Length=4661
Score = 408 bits (452), Expect = 7e-112
Identities = 267/293 (91%), Gaps = 1/293 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||||
Sbjct 3875 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 3817
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 3816 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 3757
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3756 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 3697
Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240
||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |
Sbjct 3696 GAACGCTTGGCTGCCACAAGCCAGTTATCTCTGTGGTAACTTTTCTGACACCTCTAGCTT 3637
Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293
|||||| ||| || |||||||||||||||||||| |||||| |||| ||||||
Sbjct 3636 CAAATTCCGAAGGTCTAAAGGATCGATAGGCCACGCTTTCACGGTTCGTATTC 3584
>seq21710
Length=7620
Score = 183 bits (202), Expect = 5e-44
Identities = 133/153 (87%), Gaps = 1/153 (1%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60
||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||||
Sbjct 7260 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 7318
Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120
||||||||||||||||||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 7319 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 7378
Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACAT 153
| |||||||| |||||||||||||| || ||
Sbjct 7379 ACTCTGCTTCACAATGATAGGAAGAGCTGATAT 7411
>seq23295
Length=50960
Score = 118 bits (130), Expect = 2e-24
Identities = 103/126 (82%), Gaps = 4/126 (3%)
Strand=Plus/Minus
Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219
|| |||||||||| ||||||||||| |||| |||||||||| || |||| ||| ||||||
Sbjct 38605 ATAAAAAAGCAACATCGCTATGAACACTTGTCTGCCACAAGTCAATTATTCCTATGGTAA 38546
Query 220 C---TTTTCTGGCACCTCTAGCCTCAAATT-TCGAGGGACTAAAGGATCGATAGGCCACA 275
| ||||||| ||||||||| ||||||| | || || ||||| |||||||| ||| |
Sbjct 38545 CTAATTTTCTGATACCTCTAGCTTCAAATTCTGGAAGGTCTAAAAGATCGATAAACCATA 38486
Query 276 CTTTCA 281
|||||
Sbjct 38485 TTTTCA 38480
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854056121088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |