Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01001083.1
Length=339
Score E
Sequences producing significant alignments: (Bits) Value
seq22748 165 2e-38
seq19438 129 1e-27
seq24923 125 1e-26
seq27247 84.2 4e-14
seq27037 80.6 5e-13
seq12566 75.2 2e-11
>seq22748
Length=18834
Score = 165 bits (182), Expect = 2e-38
Identities = 176/230 (77%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170
|||||||| |||| | |||||| ||||||| |||||||||| |||||||||||
Sbjct 12851 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 12792
Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229
| ||||| | |||| | || ||| | || | | |||||||||||| |||||
Sbjct 12791 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 12733
Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289
| |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| |||
Sbjct 12732 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 12673
Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339
| | || ||||| || |||||||| | ||||||||| ||| || ||||||
Sbjct 12672 TACCGAGTGGAAGGGTCGTCGCTCAATGGATAAAAGTTACTCTAGGGATA 12623
>seq19438
Length=3403
Score = 129 bits (142), Expect = 1e-27
Identities = 106/129 (82%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||| ||||| | |||||||| | |||| | | | ||||||||||||||||
Sbjct 273 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCTGCCAAGCAGGGACGAAAGTC 214
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| |||| ||||||| || ||| || ||||| || ||| |||| ||||||||||| |||
Sbjct 213 GGCCTTAGTGATCCGACGATGCCGAGTGGAAGGGTCGTTGCTCAACGGATAAAAGTTACT 154
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 153 CTAGGGATA 145
>seq24923
Length=27865
Score = 125 bits (138), Expect = 1e-26
Identities = 105/129 (81%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270
|||||||||||| ||||| | |||||||| | |||| | ||| |||||||||||||||
Sbjct 13447 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTT 13506
Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330
|| |||| |||| | |||||| || ||||| |||| ||| || ||||||||||| |||
Sbjct 13507 GGCCTTAGTGATTTGACGGTGCCGAGTGGAAGGGCCATCGTTCAACGGATAAAAGTTACT 13566
Query 331 CTGGGGATA 339
|| ||||||
Sbjct 13567 CTAGGGATA 13575
>seq27247
Length=17038
Score = 84.2 bits (92), Expect = 4e-14
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 266 AAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325
||||||| |||| ||||||| |||||| || ||||| ||| ||||||| |||||||||||
Sbjct 7942 AAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCTGTCGCTCAACGGATAAAAG 8001
Query 326 CTACCCTGGGGATA 339
||| || ||||||
Sbjct 8002 TTACTCTAGGGATA 8015
>seq27037
Length=48240
Score = 80.6 bits (88), Expect = 5e-13
Identities = 65/79 (82%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 261 GACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGAT 320
||||||||| || |||| |||||| |||||| || ||||| ||||||||||| | |||
Sbjct 31680 GACGAAAGTTGGCCTTAGTGATCCAACGGTGCCGAGTGGAAGGGCCGTCGCTCAATAGAT 31739
Query 321 AAAAGCTACCCTGGGGATA 339
||||| ||| || ||||||
Sbjct 31740 AAAAGTTACTCTAGGGATA 31758
>seq12566
Length=39011
Score = 75.2 bits (82), Expect = 2e-11
Identities = 55/64 (86%), Gaps = 0/64 (0%)
Strand=Plus/Minus
Query 276 TAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGG 335
|| ||||||| |||||| || ||||| ||||||||||| ||||||||||| ||| || ||
Sbjct 31716 TAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGG 31657
Query 336 GATA 339
||||
Sbjct 31656 GATA 31653
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 982004603648
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |