Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq22748 165 2e-38 seq19438 129 1e-27 seq24923 125 1e-26 seq27247 84.2 4e-14 seq27037 80.6 5e-13 seq12566 75.2 2e-11 >seq22748 Length=18834 Score = 165 bits (182), Expect = 2e-38 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 12851 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 12792 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 12791 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 12733 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 12732 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 12673 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | || ||||| || |||||||| | ||||||||| ||| || |||||| Sbjct 12672 TACCGAGTGGAAGGGTCGTCGCTCAATGGATAAAAGTTACTCTAGGGATA 12623 >seq19438 Length=3403 Score = 129 bits (142), Expect = 1e-27 Identities = 106/129 (82%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||||||| | |||| | | | |||||||||||||||| Sbjct 273 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCTGCCAAGCAGGGACGAAAGTC 214 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| ||||||| || ||| || ||||| || ||| |||| ||||||||||| ||| Sbjct 213 GGCCTTAGTGATCCGACGATGCCGAGTGGAAGGGTCGTTGCTCAACGGATAAAAGTTACT 154 Query 331 CTGGGGATA 339 || |||||| Sbjct 153 CTAGGGATA 145 >seq24923 Length=27865 Score = 125 bits (138), Expect = 1e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||||||||||| ||||| | |||||||| | |||| | ||| ||||||||||||||| Sbjct 13447 AGTGCAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTT 13506 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| |||| | |||||| || ||||| |||| ||| || ||||||||||| ||| Sbjct 13507 GGCCTTAGTGATTTGACGGTGCCGAGTGGAAGGGCCATCGTTCAACGGATAAAAGTTACT 13566 Query 331 CTGGGGATA 339 || |||||| Sbjct 13567 CTAGGGATA 13575 >seq27247 Length=17038 Score = 84.2 bits (92), Expect = 4e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 266 AAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAG 325 ||||||| |||| ||||||| |||||| || ||||| ||| ||||||| ||||||||||| Sbjct 7942 AAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCTGTCGCTCAACGGATAAAAG 8001 Query 326 CTACCCTGGGGATA 339 ||| || |||||| Sbjct 8002 TTACTCTAGGGATA 8015 >seq27037 Length=48240 Score = 80.6 bits (88), Expect = 5e-13 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 261 GACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGAT 320 ||||||||| || |||| |||||| |||||| || ||||| ||||||||||| | ||| Sbjct 31680 GACGAAAGTTGGCCTTAGTGATCCAACGGTGCCGAGTGGAAGGGCCGTCGCTCAATAGAT 31739 Query 321 AAAAGCTACCCTGGGGATA 339 ||||| ||| || |||||| Sbjct 31740 AAAAGTTACTCTAGGGATA 31758 >seq12566 Length=39011 Score = 75.2 bits (82), Expect = 2e-11 Identities = 55/64 (86%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 276 TAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGG 335 || ||||||| |||||| || ||||| ||||||||||| ||||||||||| ||| || || Sbjct 31716 TAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGG 31657 Query 336 GATA 339 |||| Sbjct 31656 GATA 31653 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982004603648