Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01001138.1
Length=202
Score E
Sequences producing significant alignments: (Bits) Value
seq38098 91.5 2e-16
seq22748 89.7 6e-16
seq1391 87.8 2e-15
seq3574 78.8 1e-12
seq17463 75.2 1e-11
seq12662 75.2 1e-11
seq3602 73.4 4e-11
>seq38098
Length=37492
Score = 91.5 bits (100), Expect = 2e-16
Identities = 110/153 (72%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82
||||||||| || || || |||| || ||||||||| || | | |||||||||||
Sbjct 2786 CGGGGTCTTATCATCTAGCCGTTGGTACTCCGCATCTTCATAGAGAATTCAATTTCACTG 2845
Query 83 AGCT--CACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTAC 140
|| || | || |||| |||||||||| ||||||||| |||||
Sbjct 2846 AGGGTCCATGTCGGAAACAGTGGGGCAGTCGTTACACCATTCATGCAGGTCGCTACTTAT 2905
Query 141 CCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||| |||||||||||||||||||| ||||
Sbjct 2906 GCGACAAAGAATTTCGCTACCTTAGGACAGTTA 2938
>seq22748
Length=18834
Score = 89.7 bits (98), Expect = 6e-16
Identities = 109/150 (73%), Gaps = 2/150 (1%)
Strand=Plus/Plus
Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84
|| ||||| |||| | || |||| | |||||||||| || | | ||||||| |||
Sbjct 13011 GGATCTTTCTGTCCAAGTGCAGGTAGCCCGCATCTTCACAGACATGTCTATTTCACCGAG 13070
Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143
| | | | ||||||| ||| || ||||| | |||||||||||||| |
Sbjct 13071 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTACGGGTCGGAACTTACCTG 13129
Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173
|||||||||||||||| |||||||||||||
Sbjct 13130 ACAAGGAATTTCGCTAACTTAGGACCGTTA 13159
>seq1391
Length=23006
Score = 87.8 bits (96), Expect = 2e-15
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 4762 TACGCCTTTCGTGCGGGTCAAAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 4821
Query 173 A 173
|
Sbjct 4822 A 4822
>seq3574
Length=40537
Score = 78.8 bits (86), Expect = 1e-12
Identities = 54/61 (89%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||| || ||||||| ||| ||||||||||| |||||||||||||||| ||||| ||||||
Sbjct 36836 TACGCCTTTCGTGCGGGTTGGAACTTACCCAACAAGGAATTTCGCTATCTTAGAACCGTT 36895
Query 173 A 173
|
Sbjct 36896 A 36896
>seq17463
Length=17885
Score = 75.2 bits (82), Expect = 1e-11
Identities = 53/61 (87%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
||||| ||| ||| |||| |||||||||||||||||||||| ||||||||||||| ||
Sbjct 5950 TACACGTTTCATGCGGGTCAAAACTTACCCGACAAGGAATTTCACTACCTTAGGACCATT 6009
Query 173 A 173
|
Sbjct 6010 A 6010
>seq12662
Length=54041
Score = 75.2 bits (82), Expect = 1e-11
Identities = 53/61 (87%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
|||||||||||||||||||| ||||| |||||||||||||||||| |||||| |||
Sbjct 43647 TACACCATTCGTGCAGGTCGCTACTTATGTGACAAGGAATTTCGCTACTGTAGGACAGTT 43588
Query 173 A 173
|
Sbjct 43587 A 43587
>seq3602
Length=31274
Score = 73.4 bits (80), Expect = 4e-11
Identities = 48/53 (91%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172
|| ||||| || ||||||||||||||||| |||||||||||||||||||| ||
Sbjct 20294 TTTGTGCAAGTTGGAACTTACCCGACAAGCAATTTCGCTACCTTAGGACCATT 20242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 546986645352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |