Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq38098 91.5 2e-16 seq22748 89.7 6e-16 seq1391 87.8 2e-15 seq3574 78.8 1e-12 seq17463 75.2 1e-11 seq12662 75.2 1e-11 seq3602 73.4 4e-11 >seq38098 Length=37492 Score = 91.5 bits (100), Expect = 2e-16 Identities = 110/153 (72%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| || || || |||| || ||||||||| || | | ||||||||||| Sbjct 2786 CGGGGTCTTATCATCTAGCCGTTGGTACTCCGCATCTTCATAGAGAATTCAATTTCACTG 2845 Query 83 AGCT--CACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTAC 140 || || | || |||| |||||||||| ||||||||| ||||| Sbjct 2846 AGGGTCCATGTCGGAAACAGTGGGGCAGTCGTTACACCATTCATGCAGGTCGCTACTTAT 2905 Query 141 CCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||| |||||||||||||||||||| |||| Sbjct 2906 GCGACAAAGAATTTCGCTACCTTAGGACAGTTA 2938 >seq22748 Length=18834 Score = 89.7 bits (98), Expect = 6e-16 Identities = 109/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 || ||||| |||| | || |||| | |||||||||| || | | ||||||| ||| Sbjct 13011 GGATCTTTCTGTCCAAGTGCAGGTAGCCCGCATCTTCACAGACATGTCTATTTCACCGAG 13070 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||| | |||||||||||||| | Sbjct 13071 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTACGGGTCGGAACTTACCTG 13129 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||| ||||||||||||| Sbjct 13130 ACAAGGAATTTCGCTAACTTAGGACCGTTA 13159 >seq1391 Length=23006 Score = 87.8 bits (96), Expect = 2e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 4762 TACGCCTTTCGTGCGGGTCAAAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 4821 Query 173 A 173 | Sbjct 4822 A 4822 >seq3574 Length=40537 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||| ||||||||||| |||||||||||||||| ||||| |||||| Sbjct 36836 TACGCCTTTCGTGCGGGTTGGAACTTACCCAACAAGGAATTTCGCTATCTTAGAACCGTT 36895 Query 173 A 173 | Sbjct 36896 A 36896 >seq17463 Length=17885 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||||| ||| ||| |||| |||||||||||||||||||||| ||||||||||||| || Sbjct 5950 TACACGTTTCATGCGGGTCAAAACTTACCCGACAAGGAATTTCACTACCTTAGGACCATT 6009 Query 173 A 173 | Sbjct 6010 A 6010 >seq12662 Length=54041 Score = 75.2 bits (82), Expect = 1e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||| Sbjct 43647 TACACCATTCGTGCAGGTCGCTACTTATGTGACAAGGAATTTCGCTACTGTAGGACAGTT 43588 Query 173 A 173 | Sbjct 43587 A 43587 >seq3602 Length=31274 Score = 73.4 bits (80), Expect = 4e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 120 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 || ||||| || ||||||||||||||||| |||||||||||||||||||| || Sbjct 20294 TTTGTGCAAGTTGGAACTTACCCGACAAGCAATTTCGCTACCTTAGGACCATT 20242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546986645352