Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq15005 203 7e-50 seq29079 201 2e-49 seq1481 176 1e-41 seq29539 150 4e-34 seq9098 140 7e-31 seq33642 89.7 1e-15 >seq15005 Length=3975 Score = 203 bits (224), Expect = 7e-50 Identities = 179/220 (81%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 823 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 880 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 881 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 940 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 941 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 1000 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||| | ||||| | || ||||||||| | ||||| Sbjct 1001 GACCAACGACCTAATACTACGCAGGCTCATCAAACAGCGC 1040 >seq29079 Length=112050 Score = 201 bits (222), Expect = 2e-49 Identities = 159/188 (85%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 11 CGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAAT 70 || || |||||| | | |||||||||||| || ||| ||||||||||||||| || Sbjct 30213 CGTAGGCCTTCTACCTC-CACGCGGCATTG-CTCCGTCAAGCTTTCGCCCATTGTGGAAA 30156 Query 71 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGAT 130 |||||||||||||||||||||||||||||| | || ||||||||| |||||||| | ||| Sbjct 30155 ATTCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCATGTCTCAGTCCCAGTGTGGCCGAT 30096 Query 131 CATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCT 190 ||||||||| |||||| |||||||| || ||||||| ||| ||| |||||||||||||| Sbjct 30095 CATCCTCTCGGACCAGCTACGGATCATCACCTTGGTAAGCTATTGTCTCACCAACTAGCT 30036 Query 191 AATCCGAC 198 |||| ||| Sbjct 30035 AATCAGAC 30028 >seq1481 Length=19650 Score = 176 bits (194), Expect = 1e-41 Identities = 141/169 (83%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||| |||||| | | |||||| ||||| ||||| || || ||||||||||||||| Sbjct 3559 CACGCTGCATTGCTTCG-TCAGGCCTTCGCTCATTGCAGAAAATCCCCCACTGCTGCCTC 3501 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||| ||| ||| |||| | |||||||||||| |||||| | Sbjct 3500 CCGTAGGAGTCTGGGCCGTGTCTTAGTCCCAATGTGGCGGATCATCCTCTCGGACCAGCT 3441 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGA 197 || |||| || ||||||| ||| ||| |||||||||||||||||| || Sbjct 3440 ACTGATCATCACCTTGGTAAGCTATTGGCTCACCAACTAGCTAATCAGA 3392 >seq29539 Length=35504 Score = 150 bits (166), Expect = 4e-34 Identities = 147/184 (80%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 10 CCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAA 69 ||| || |||||| | | ||||||||||| || ||||||||||||||||||| || Sbjct 3713 CCGTAGGCCTTCTACCTC-CACGCGGCATTA-CTCCATCAGGCTTTCGCCCATTGCAGAA 3770 Query 70 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGA 129 |||| | ||||| ||||| ||| |||| ||| ||||||||||||| ||| || ||| Sbjct 3771 AATTCTC-ACTGCGGCCTCTGGTAAGAGTTTGGGCCGTGTCTCAGTTT-AGTATGGTTGA 3828 Query 130 TCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGC 189 |||||| ||| ||| || ||| ||| |||||||||| ||| ||| |||||||||||||| Sbjct 3829 TCATCCCCTCGGACTAGCTACTGATTGTCGCCTTGGCAAGCTATTGCCTCACCAACTAGC 3888 Query 190 TAAT 193 |||| Sbjct 3889 TAAT 3892 >seq9098 Length=5062 Score = 140 bits (154), Expect = 7e-31 Identities = 139/176 (79%), Gaps = 3/176 (2%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| || ||| |||| || |||| |||||||||||||||||||| |||||| Sbjct 3398 CCTTCTT-CACTCATGCGATATTG-CTTGATCGGGCTTTCGCCCATTGTCCAAGATTCCC 3455 Query 77 CACTGCTGCCTCC-CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 |||||||||| || ||| |||| | ||||||||| | |||||||| |||||||||| Sbjct 3456 CACTGCTGCCCCCTCGTGCGAGTACAGGCCGTGTCTCTATCCCAGTGTGGCTGATCATCC 3515 Query 136 TCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTA 191 ||||||| || | ||| | | ||||| |||| |||||| |||||| | ||| Sbjct 3516 AAAAAGACCAGCTAAGCATCATTGGGTTGGTCAGCCTTTACCTGACCAACGACCTA 3571 >seq33642 Length=22259 Score = 89.7 bits (98), Expect = 1e-15 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 120 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 179 || || |||||||||||||| |||||| ||| |||| | |||||| | ||| ||| |||| Sbjct 21896 GTATGGCTGATCATCCTCTCGGACCAGCTACTGATCATTGCCTTGATAAGCTATTGCCTC 21955 Query 180 ACCAACTAGCTAATCCGAC 198 ||||||||||||||| ||| Sbjct 21956 ACCAACTAGCTAATCAGAC 21974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071568541440