Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq22748 259 2e-66 seq1391 158 4e-36 seq25396 116 1e-23 seq9254 109 2e-21 seq5914 107 7e-21 seq2270 93.3 2e-16 >seq22748 Length=18834 Score = 259 bits (286), Expect = 2e-66 Identities = 344/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 14243 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 14302 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 14303 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 14362 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 14363 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 14422 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | |||| || |||||||||||||||||||| || || |||| Sbjct 14423 ACAAT----TGCCCCATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 14475 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 14476 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 14530 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| || || |||| || | ||| | || | ||||||| || ||||||||| Sbjct 14531 TCCT----GG----TCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCAC 14582 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | | |||||||||||| | Sbjct 14583 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCA 14642 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 14643 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 14692 Score = 259 bits (286), Expect = 2e-66 Identities = 344/470 (73%), Gaps = 27/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 16708 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 16767 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| || Sbjct 16768 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 16827 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | |||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 16828 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 16887 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370 || | |||| || |||||||||||||||||||| || || |||| Sbjct 16888 ACAAT----TGCCCCATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 16940 Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| |||||||||||||| |||||||| |||| | Sbjct 16941 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 16995 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| || || |||| || | ||| | || | ||||||| || ||||||||| Sbjct 16996 TCCT----GG----TCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCAC 17047 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | | |||||||||||| | Sbjct 17048 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCA 17107 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||||||||||| ||| |||||||| | |||||||||| ||| || Sbjct 17108 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 17157 >seq1391 Length=23006 Score = 158 bits (174), Expect = 4e-36 Identities = 322/470 (69%), Gaps = 29/470 (6%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || ||||| ||||| | ||| ||| | ||| || |||| ||| | Sbjct 5904 GCTGCGCCTCAA--CATTTTGGGGATAGCCAACTAGCTTTGGGTTCGAGTGGCATTTAGC 5961 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 ||||| ||||| |||| || | | |||||| | ||| |||| ||||||| || Sbjct 5962 CCCTAACCACAACTCATTTGCTGATTCTTCAACATCAGTCAGTTCAAACCTCCACTTAGT 6021 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGA--TCGTG 314 | |||| |||||| ||| ||||||||||||||| || ||||| | | || Sbjct 6022 TTCACCCAAGCTTCATCCTCGCCATGGATAGATCACCCATGTTTGGGTCCATAAGTAATG 6081 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TAA 370 || | |||| || |||||||||||||||||||| || || | ||| Sbjct 6082 ACAATT----GCCCCATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 6134 Query 371 CCTCGCGACACAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429 || || ||| | | | |||| ||||||||||||| | |||||| ||| || Sbjct 6135 CCAAGC--CACTGCCTATGAGTCGCTAGCTCATTCTTCAACAAGCACGCGATCAGA--GT 6190 Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489 ||| || || |||| || ||| | || | ||||||| || ||||||||| Sbjct 6191 -CCT----GG----TCTCCTCCCACTACTTGGAAGCTTACGGTTTCATGTTCTATTTCAC 6241 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||||| ||||| ||||||||| ||||||||||||||| | | |||| |||||| | Sbjct 6242 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATTAGTCACCCA 6301 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 |||||||||| ||| |||||||| | ||||||||||| ||| || Sbjct 6302 AGAGTATTTAGCCTTGCAAGGTGGTCCTTGCGGATTCACACGAGATTCCA 6351 >seq25396 Length=25890 Score = 116 bits (128), Expect = 1e-23 Identities = 99/122 (81%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 478 GTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537 || ||||||||||||||| ||||| ||||||||| ||||||||||||||| | | || Sbjct 24430 GTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACT 24489 Query 538 ATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTT 597 |||||||||| |||||||||||| ||| |||||||| | |||||||||| ||| Sbjct 24490 ATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTC 24549 Query 598 CA 599 || Sbjct 24550 CA 24551 >seq9254 Length=9297 Score = 109 bits (120), Expect = 2e-21 Identities = 103/130 (79%), Gaps = 1/130 (1%) Strand=Plus/Plus Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529 ||||||| || |||||||||||| || || || ||||||||| |||||||| |||||| Sbjct 1832 GGTTTCATGTTCTATTTCACTCCTCGATGGGTGT-CTTTTCACCCTTCCCTCATGGTACT 1890 Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 | | ||||||||||| |||||||||||| ||| |||||||| | |||||||| Sbjct 1891 ATTTCATTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACA 1950 Query 590 CGAAATTTCA 599 || |||| || Sbjct 1951 CGGAATTCCA 1960 >seq5914 Length=11454 Score = 107 bits (118), Expect = 7e-21 Identities = 272/407 (67%), Gaps = 35/407 (9%) Strand=Plus/Minus Query 191 TTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250 ||||||||||| ||||| ||||| || | | |||||| | ||| ||| || |||||| Sbjct 1043 TTTCACCCCTAACCACAACTCATCTGCTGATTCTTCAACATCAGTCAGTTTGGACCTCCA 984 Query 251 CGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGA 309 | || | ||| | |||| ||| ||| |||||||||| |||||||| | | Sbjct 983 CTTAGTTTCACCTAAGGTTCATCCTAGTCATAGATAGATCACCCAAGTTCGGGTCCATAA 924 Query 310 TC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTT 368 | ||| || | |||| || ||||||||||| ||||||| | ||||| Sbjct 923 GCAGTGACAATT----GCCCCATGAAGACTCGCTTTCATTACGGCTTCGGT----GGGTT 872 Query 369 -----AACCTCGCGACACAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTC 422 |||| || ||| || | | |||| ||||||||||||| | ||||| ||| Sbjct 871 CCCTTAACCAAGC--CACTACCTATGAGTCGCCAGCTCATTCTTCAACAAGCACGTTGTC 814 Query 423 ACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACT 482 | || |||| || |||| || | ||| | | | ||||||| || || Sbjct 813 AAA--GT-CCTAG--------TCTCCTCCCACTGCTTGGAAGGTTACGGTTTCATGTTCT 765 Query 483 ATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGG 542 ||||||||| ||||| ||||||||| || |||||||||||| | |||| | Sbjct 764 ATTTCACTCG------GGGGTTCTTTTCACCCTTTCCTCACGGTACTACTTTATTATCAG 711 Query 543 TCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589 ||||| ||||||||||| |||| |||| ||| | |||||||| Sbjct 710 TCACCCGGGAGTATTTAGCCTTACAAGGTGATCCTTGCTGATTCACA 664 >seq2270 Length=29089 Score = 93.3 bits (102), Expect = 2e-16 Identities = 113/152 (74%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTT 507 |||| || | ||| | || | ||||||| || ||||||||||||| |||||| ||| Sbjct 23197 CTCCCACTGCTTGGAAGCTAACGGTTTCATGTTCTATTTCACTCCCATATAGGGGTTCTT 23256 Query 508 TTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAAC 567 ||||||||||||| | ||||| | | |||||||| ||| || ||||||||| ||| Sbjct 23257 TTCACCTTTCCCTGATGGTACAT---CACTATCGGT-ACCCAGAAGTATTTAGCCTTGCA 23312 Query 568 GGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 | |||||| |||||||| || ||| || Sbjct 23313 AGTTGGTCCTTATTGATTCACATGAGATTCCA 23344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1816868452352