Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01001213.1
Length=600
Score E
Sequences producing significant alignments: (Bits) Value
seq22748 259 2e-66
seq1391 158 4e-36
seq25396 116 1e-23
seq9254 109 2e-21
seq5914 107 7e-21
seq2270 93.3 2e-16
>seq22748
Length=18834
Score = 259 bits (286), Expect = 2e-66
Identities = 344/470 (73%), Gaps = 27/470 (6%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 14243 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 14302
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 14303 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 14362
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 14363 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 14422
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | |||| || |||||||||||||||||||| || || ||||
Sbjct 14423 ACAAT----TGCCCCATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 14475
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| |||||||||||||| |||||||| |||| |
Sbjct 14476 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 14530
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
||| || || |||| || | ||| | || | ||||||| || |||||||||
Sbjct 14531 TCCT----GG----TCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCAC 14582
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| ||||||||| ||||||||||||||| | | |||||||||||| |
Sbjct 14583 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCA 14642
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 14643 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 14692
Score = 259 bits (286), Expect = 2e-66
Identities = 344/470 (73%), Gaps = 27/470 (6%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || |||||||||||||||||||||| | | ||| || |||| ||||||
Sbjct 16708 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 16767
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||||| || | | |||||| | ||| ||||||| ||||||| ||
Sbjct 16768 CCCTAACCACAACTCATCCGCTGATTCTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 16827
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314
| |||| |||||| |||| |||||||||||||| | ||||||| | | | | |||
Sbjct 16828 TTCACCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 16887
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGG----GTTAA 370
|| | |||| || |||||||||||||||||||| || || ||||
Sbjct 16888 ACAAT----TGCCCCATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 16940
Query 371 CCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| |||||||||||||| |||||||| |||| |
Sbjct 16941 CCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---GAG 16995
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
||| || || |||| || | ||| | || | ||||||| || |||||||||
Sbjct 16996 TCCT----GG----TCTCCTCCCACTGCTTGGAAGCTTACGGTTTCATGTTCTATTTCAC 17047
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| ||||||||| ||||||||||||||| | | |||||||||||| |
Sbjct 17048 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATCGGTCACCCA 17107
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
||||||||||| ||| |||||||| | |||||||||| ||| ||
Sbjct 17108 GGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCA 17157
>seq1391
Length=23006
Score = 158 bits (174), Expect = 4e-36
Identities = 322/470 (69%), Gaps = 29/470 (6%)
Strand=Plus/Plus
Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196
||||| ||| || ||||| ||||| | ||| ||| | ||| || |||| ||| |
Sbjct 5904 GCTGCGCCTCAA--CATTTTGGGGATAGCCAACTAGCTTTGGGTTCGAGTGGCATTTAGC 5961
Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256
||||| ||||| |||| || | | |||||| | ||| |||| ||||||| ||
Sbjct 5962 CCCTAACCACAACTCATTTGCTGATTCTTCAACATCAGTCAGTTCAAACCTCCACTTAGT 6021
Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGA--TCGTG 314
| |||| |||||| ||| ||||||||||||||| || ||||| | | ||
Sbjct 6022 TTCACCCAAGCTTCATCCTCGCCATGGATAGATCACCCATGTTTGGGTCCATAAGTAATG 6081
Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT----TAA 370
|| | |||| || |||||||||||||||||||| || || | |||
Sbjct 6082 ACAATT----GCCCCATGAAGACTCGCTTTCGCTACGGCT---CCGGTGGGTTCCCTTAA 6134
Query 371 CCTCGCGACACAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGT 429
|| || ||| | | | |||| ||||||||||||| | |||||| ||| ||
Sbjct 6135 CCAAGC--CACTGCCTATGAGTCGCTAGCTCATTCTTCAACAAGCACGCGATCAGA--GT 6190
Query 430 ACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCAC 489
||| || || |||| || ||| | || | ||||||| || |||||||||
Sbjct 6191 -CCT----GG----TCTCCTCCCACTACTTGGAAGCTTACGGTTTCATGTTCTATTTCAC 6241
Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549
|||||| ||||| ||||||||| ||||||||||||||| | | |||| |||||| |
Sbjct 6242 TCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACTATTAGTCACCCA 6301
Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
|||||||||| ||| |||||||| | ||||||||||| ||| ||
Sbjct 6302 AGAGTATTTAGCCTTGCAAGGTGGTCCTTGCGGATTCACACGAGATTCCA 6351
>seq25396
Length=25890
Score = 116 bits (128), Expect = 1e-23
Identities = 99/122 (81%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 478 GTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCT 537
|| ||||||||||||||| ||||| ||||||||| ||||||||||||||| | | ||
Sbjct 24430 GTTCTATTTCACTCCCCGATGGGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCACT 24489
Query 538 ATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTT 597
|||||||||| |||||||||||| ||| |||||||| | |||||||||| |||
Sbjct 24490 ATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTC 24549
Query 598 CA 599
||
Sbjct 24550 CA 24551
>seq9254
Length=9297
Score = 109 bits (120), Expect = 2e-21
Identities = 103/130 (79%), Gaps = 1/130 (1%)
Strand=Plus/Plus
Query 470 GGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACT 529
||||||| || |||||||||||| || || || ||||||||| |||||||| ||||||
Sbjct 1832 GGTTTCATGTTCTATTTCACTCCTCGATGGGTGT-CTTTTCACCCTTCCCTCATGGTACT 1890
Query 530 TGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589
| | ||||||||||| |||||||||||| ||| |||||||| | ||||||||
Sbjct 1891 ATTTCATTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACA 1950
Query 590 CGAAATTTCA 599
|| |||| ||
Sbjct 1951 CGGAATTCCA 1960
>seq5914
Length=11454
Score = 107 bits (118), Expect = 7e-21
Identities = 272/407 (67%), Gaps = 35/407 (9%)
Strand=Plus/Minus
Query 191 TTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCA 250
||||||||||| ||||| ||||| || | | |||||| | ||| ||| || ||||||
Sbjct 1043 TTTCACCCCTAACCACAACTCATCTGCTGATTCTTCAACATCAGTCAGTTTGGACCTCCA 984
Query 251 CGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCT-TGA 309
| || | ||| | |||| ||| ||| |||||||||| |||||||| | |
Sbjct 983 CTTAGTTTCACCTAAGGTTCATCCTAGTCATAGATAGATCACCCAAGTTCGGGTCCATAA 924
Query 310 TC-GTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGTT 368
| ||| || | |||| || ||||||||||| ||||||| | |||||
Sbjct 923 GCAGTGACAATT----GCCCCATGAAGACTCGCTTTCATTACGGCTTCGGT----GGGTT 872
Query 369 -----AACCTCGCGACACAACGCAA-ACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTC 422
|||| || ||| || | | |||| ||||||||||||| | ||||| |||
Sbjct 871 CCCTTAACCAAGC--CACTACCTATGAGTCGCCAGCTCATTCTTCAACAAGCACGTTGTC 814
Query 423 ACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACT 482
| || |||| || |||| || | ||| | | | ||||||| || ||
Sbjct 813 AAA--GT-CCTAG--------TCTCCTCCCACTGCTTGGAAGGTTACGGTTTCATGTTCT 765
Query 483 ATTTCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGG 542
||||||||| ||||| ||||||||| || |||||||||||| | |||| |
Sbjct 764 ATTTCACTCG------GGGGTTCTTTTCACCCTTTCCTCACGGTACTACTTTATTATCAG 711
Query 543 TCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCACA 589
||||| ||||||||||| |||| |||| ||| | ||||||||
Sbjct 710 TCACCCGGGAGTATTTAGCCTTACAAGGTGATCCTTGCTGATTCACA 664
>seq2270
Length=29089
Score = 93.3 bits (102), Expect = 2e-16
Identities = 113/152 (74%), Gaps = 4/152 (3%)
Strand=Plus/Plus
Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCCAGGGGTACTT 507
|||| || | ||| | || | ||||||| || ||||||||||||| |||||| |||
Sbjct 23197 CTCCCACTGCTTGGAAGCTAACGGTTTCATGTTCTATTTCACTCCCATATAGGGGTTCTT 23256
Query 508 TTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAAC 567
||||||||||||| | ||||| | | |||||||| ||| || ||||||||| |||
Sbjct 23257 TTCACCTTTCCCTGATGGTACAT---CACTATCGGT-ACCCAGAAGTATTTAGCCTTGCA 23312
Query 568 GGGTGGTCCCGCCAGATTCACACGAAATTTCA 599
| |||||| |||||||| || ||| ||
Sbjct 23313 AGTTGGTCCTTATTGATTCACATGAGATTCCA 23344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1816868452352
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |