Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq29079 187 5e-45 seq1481 161 2e-37 seq15005 132 1e-28 seq29539 96.9 7e-18 seq9098 91.5 3e-16 >seq29079 Length=112050 Score = 187 bits (206), Expect = 5e-45 Identities = 151/183 (83%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||| | |||| ||||||||| || || ||||||||||||||||||||| Sbjct 30191 GGCATTGCTCCGTCAAGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTAG 30132 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||| |||| ||||||||||||| |||||||| ||| |||||| | || ||||| ||| Sbjct 30131 GAGTCTAGGCCATGTCTCAGTCCCAGTGTGGCCGATCATCCTCTCGGACCAGCTACGGAT 30072 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | || |||||| |||||| |||||||||||| |||||| | ||||||||| || | | Sbjct 30071 CATCACCTTGGTAAGCTATTGTCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGA 30012 Query 181 GCG 183 ||| Sbjct 30011 GCG 30009 >seq1481 Length=19650 Score = 161 bits (178), Expect = 2e-37 Identities = 128/154 (83%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 ||| | ||||| ||| | ||||| || |||||||||||||||||||||||||||||| Sbjct 3548 GCTTCGTCAGGCCTTCGCTCATTGCAGAAAATCCCCCACTGCTGCCTCCCGTAGGAGTCT 3489 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||| |||||||||||||| | ||| |||||| | || ||||| |||| || Sbjct 3488 GGGCCGTGTCTTAGTCCCAATGTGGCGGATCATCCTCTCGGACCAGCTACTGATCATCAC 3429 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATC 160 |||||| |||||| ||||||||||| |||||| Sbjct 3428 CTTGGTAAGCTATTGGCTCACCAACTAGCTAATC 3395 >seq15005 Length=3975 Score = 132 bits (146), Expect = 1e-28 Identities = 121/153 (79%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| |||||| Sbjct 863 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 922 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| || || || |||| ||| | || Sbjct 923 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 982 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||||| || ||| || |||||| ||||||| Sbjct 983 CTTGGTCAGCCTTTACCTGACCAACGACCTAAT 1015 >seq29539 Length=35504 Score = 96.9 bits (106), Expect = 7e-18 Identities = 114/152 (75%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 8 CTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG 67 || ||||||| |||| ||||||| || || | | ||||| ||||| ||| |||| || Sbjct 3743 CTCCATCAGGCTTTCGCCCATTGCAGAAAATTCTC-ACTGCGGCCTCTGGTAAGAGTTTG 3801 Query 68 GGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGC 127 |||||||||||||| | | ||| | ||| || ||| | | ||||| ||| |||| | Sbjct 3802 GGCCGTGTCTCAGT-TTAGTATGGTTGATCATCCCCTCGGACTAGCTACTGATTGTCGCC 3860 Query 128 TTGGTGGGCTATTATCTCACCAACTACCTAAT 159 |||| |||||| ||||||||||| ||||| Sbjct 3861 TTGGCAAGCTATTGCCTCACCAACTAGCTAAT 3892 >seq9098 Length=5062 Score = 91.5 bits (100), Expect = 3e-16 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCC-CGTAGGAGTCTGGGC 70 ||| || |||| |||||||| ||| || ||||||||||||| || ||| |||| ||| Sbjct 3425 ATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCTCGTGCGAGTACAGGC 3484 Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130 |||||||| ||||| |||||| | ||| || || || |||| ||| | || ||| Sbjct 3485 CGTGTCTCTATCCCAGTGTGGCTGATCATCCAAAAAGACCAGCTAAGCATCATTGGGTTG 3544 Query 131 GTGGGCTATTATCTCACCAACTACCTA 157 || || ||| || |||||| ||||| Sbjct 3545 GTCAGCCTTTACCTGACCAACGACCTA 3571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 997998163968