Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01001432.1
Length=344
Score E
Sequences producing significant alignments: (Bits) Value
seq29079 187 5e-45
seq1481 161 2e-37
seq15005 132 1e-28
seq29539 96.9 7e-18
seq9098 91.5 3e-16
>seq29079
Length=112050
Score = 187 bits (206), Expect = 5e-45
Identities = 151/183 (83%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60
||| | ||| | ||| | |||| ||||||||| || || |||||||||||||||||||||
Sbjct 30191 GGCATTGCTCCGTCAAGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTAG 30132
Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120
|||||| |||| ||||||||||||| |||||||| ||| |||||| | || ||||| |||
Sbjct 30131 GAGTCTAGGCCATGTCTCAGTCCCAGTGTGGCCGATCATCCTCTCGGACCAGCTACGGAT 30072
Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180
| || |||||| |||||| |||||||||||| |||||| | ||||||||| || | |
Sbjct 30071 CATCACCTTGGTAAGCTATTGTCTCACCAACTAGCTAATCAGACGCGAGCCCCTCCTCGA 30012
Query 181 GCG 183
|||
Sbjct 30011 GCG 30009
>seq1481
Length=19650
Score = 161 bits (178), Expect = 2e-37
Identities = 128/154 (83%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
||| | ||||| ||| | ||||| || ||||||||||||||||||||||||||||||
Sbjct 3548 GCTTCGTCAGGCCTTCGCTCATTGCAGAAAATCCCCCACTGCTGCCTCCCGTAGGAGTCT 3489
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||||||||| |||||||||||||| | ||| |||||| | || ||||| |||| ||
Sbjct 3488 GGGCCGTGTCTTAGTCCCAATGTGGCGGATCATCCTCTCGGACCAGCTACTGATCATCAC 3429
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATC 160
|||||| |||||| ||||||||||| ||||||
Sbjct 3428 CTTGGTAAGCTATTGGCTCACCAACTAGCTAATC 3395
>seq15005
Length=3975
Score = 132 bits (146), Expect = 1e-28
Identities = 121/153 (79%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66
|||| ||| || |||| |||||||| ||| || ||||||||||||| ||||| ||||||
Sbjct 863 GCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCC 922
Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126
||||||||||||||||||| |||||| | ||| || || || |||| ||| | ||
Sbjct 923 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGG 982
Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||||| || ||| || |||||| |||||||
Sbjct 983 CTTGGTCAGCCTTTACCTGACCAACGACCTAAT 1015
>seq29539
Length=35504
Score = 96.9 bits (106), Expect = 7e-18
Identities = 114/152 (75%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 8 CTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCTG 67
|| ||||||| |||| ||||||| || || | | ||||| ||||| ||| |||| ||
Sbjct 3743 CTCCATCAGGCTTTCGCCCATTGCAGAAAATTCTC-ACTGCGGCCTCTGGTAAGAGTTTG 3801
Query 68 GGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGC 127
|||||||||||||| | | ||| | ||| || ||| | | ||||| ||| |||| |
Sbjct 3802 GGCCGTGTCTCAGT-TTAGTATGGTTGATCATCCCCTCGGACTAGCTACTGATTGTCGCC 3860
Query 128 TTGGTGGGCTATTATCTCACCAACTACCTAAT 159
|||| |||||| ||||||||||| |||||
Sbjct 3861 TTGGCAAGCTATTGCCTCACCAACTAGCTAAT 3892
>seq9098
Length=5062
Score = 91.5 bits (100), Expect = 3e-16
Identities = 109/147 (74%), Gaps = 1/147 (1%)
Strand=Plus/Plus
Query 12 ATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCC-CGTAGGAGTCTGGGC 70
||| || |||| |||||||| ||| || ||||||||||||| || ||| |||| |||
Sbjct 3425 ATCGGGCTTTCGCCCATTGTCCAAGATTCCCCACTGCTGCCCCCTCGTGCGAGTACAGGC 3484
Query 71 CGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGGCTTG 130
|||||||| ||||| |||||| | ||| || || || |||| ||| | || |||
Sbjct 3485 CGTGTCTCTATCCCAGTGTGGCTGATCATCCAAAAAGACCAGCTAAGCATCATTGGGTTG 3544
Query 131 GTGGGCTATTATCTCACCAACTACCTA 157
|| || ||| || |||||| |||||
Sbjct 3545 GTCAGCCTTTACCTGACCAACGACCTA 3571
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 997998163968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |