Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq22748 223 8e-56 seq1391 181 2e-43 seq13492 145 2e-32 seq23253 93.3 1e-16 >seq22748 Length=18834 Score = 223 bits (246), Expect = 8e-56 Identities = 301/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 13693 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 13752 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 13753 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 13812 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||||| || | | | ||||| || || | | Sbjct 13813 ACATTCTCGCTTCCGCTTCG--TCCACCACTGC-TCGCGCAGGTGCTTC-CCTCTAAGGC 13868 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 13869 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 13924 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 13925 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 13983 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 13984 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 14043 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 14044 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 14092 Score = 223 bits (246), Expect = 8e-56 Identities = 301/409 (74%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 16158 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 16217 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 16218 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 16277 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 ||||||| || ||| || |||||||| || | | | ||||| || || | | Sbjct 16278 ACATTCTCGCTTCCGCTTCG--TCCACCACTGC-TCGCGCAGGTGCTTC-CCTCTAAGGC 16333 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||||||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 16334 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 16389 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | | || || ||||||||||||||||||||||||||| Sbjct 16390 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 16448 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||||| ||||| ||| | | || |||||| ||||| Sbjct 16449 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 16508 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 || || |||||||||||||||| ||||| ||||||||||||||||| Sbjct 16509 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 16557 >seq1391 Length=23006 Score = 181 bits (200), Expect = 2e-43 Identities = 292/409 (71%), Gaps = 18/409 (4%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||| || |||||| || ||||||||| | ||| ||| | Sbjct 5354 CGACTACGCCTTTCGATCTGATCTTAGGCCCTGACTCACCCTTCGTGGACGAACCTTGGG 5413 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACAC-GCTACTCATGCCT 119 ||||||||| ||| || | | | |||||| |||| | | |||||| ||| Sbjct 5414 GAGGAACCCTTAGATTTTCAGAGCATTGGATTCTCACCAATGTTTGTGTTACTCAAGCCA 5473 Query 120 GCATTCTCACTC--GCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177 |||||||||| || | | |||||||| |||| | | ||||| || || | | Sbjct 5474 ACATTCTCACTTCTGCTTTA--TCCACCACTGC-TCACGCAGGTGCTTC-CCTCTAAGGC 5529 Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231 | ||||||| ||||| | || ||| | ||||||||||||| ||| |||| | Sbjct 5530 GGAACGCTCCTCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 5585 Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291 ||||| | ||| ||||||| | || || ||||||||||||| ||||||||||||| Sbjct 5586 CCCCGTT-CATCTTCGGCGCAAGCGCGCTCGATCAGTGAGCTATTATGCACTCTTTCAAG 5644 Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351 | |||||||||| | || |||||||| | ||||| ||| | | || |||||| |||| Sbjct 5645 GGTGGCTGCTTCTAGGCGAACCTCCTAGCTGTCTCTGCACCCCTACCTCCTTTATCACTA 5704 Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| || |||||||||||| ||| ||||| ||| ||||||||||||| Sbjct 5705 AGTGGTCATTTAGGGGCCTTAACTGGTGATCCGGGTTGTTTCCCTCTCG 5753 >seq13492 Length=22571 Score = 145 bits (160), Expect = 2e-32 Identities = 116/140 (83%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || || |||||||||||||||||||||||||||| |||||||||| | || ||||||||| Sbjct 3584 CTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTG 3525 Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378 | ||||| ||| | | || |||||| ||||||| || ||||||||||| ||| | Sbjct 3524 GCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTTTCTGGT 3465 Query 379 GATCTGGGCTGTTTCCCTCT 398 |||| ||||||||||||||| Sbjct 3464 GATCCGGGCTGTTTCCCTCT 3445 >seq23253 Length=55804 Score = 93.3 bits (102), Expect = 1e-16 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 || || |||||||||||||| ||||||||||||| |||||||||| | || ||||||||| Sbjct 52553 CTCGATCAGTGAGCTATTACACACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTG 52612 Query 319 GTTGTCTACGCAACTCCACATCCTTT 344 | ||||| ||| | | || |||||| Sbjct 52613 GCTGTCTCTGCACCCCTACCTCCTTT 52638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177126039552