Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01001752.1
Length=400
Score E
Sequences producing significant alignments: (Bits) Value
seq22748 223 8e-56
seq1391 181 2e-43
seq13492 145 2e-32
seq23253 93.3 1e-16
>seq22748
Length=18834
Score = 223 bits (246), Expect = 8e-56
Identities = 301/409 (74%), Gaps = 18/409 (4%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 13693 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 13752
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 13753 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 13812
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || |||||||| || | | | ||||| || || | |
Sbjct 13813 ACATTCTCGCTTCCGCTTCG--TCCACCACTGC-TCGCGCAGGTGCTTC-CCTCTAAGGC 13868
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | || ||| | ||||||||||||| ||| |||| |
Sbjct 13869 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 13924
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 13925 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 13983
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||
Sbjct 13984 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 14043
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 14044 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 14092
Score = 223 bits (246), Expect = 8e-56
Identities = 301/409 (74%), Gaps = 18/409 (4%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | |
Sbjct 16158 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTTGCG 16217
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119
||||||||| | | |||| | | |||||| |||| | || |||||| |||
Sbjct 16218 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 16277
Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
||||||| || ||| || |||||||| || | | | ||||| || || | |
Sbjct 16278 ACATTCTCGCTTCCGCTTCG--TCCACCACTGC-TCGCGCAGGTGCTTC-CCTCTAAGGC 16333
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||||||||| | || ||| | ||||||||||||| ||| |||| |
Sbjct 16334 GGAACGCTCCCCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 16389
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | | || || |||||||||||||||||||||||||||
Sbjct 16390 CCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTCAAG 16448
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||||| ||||| ||| | | || |||||| |||||
Sbjct 16449 GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTG 16508
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
|| || |||||||||||||||| ||||| |||||||||||||||||
Sbjct 16509 AGCGGTCATTTAGGGGCCTTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 16557
>seq1391
Length=23006
Score = 181 bits (200), Expect = 2e-43
Identities = 292/409 (71%), Gaps = 18/409 (4%)
Strand=Plus/Plus
Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60
||||||||||| ||| || |||||| || ||||||||| | ||| ||| |
Sbjct 5354 CGACTACGCCTTTCGATCTGATCTTAGGCCCTGACTCACCCTTCGTGGACGAACCTTGGG 5413
Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACAC-GCTACTCATGCCT 119
||||||||| ||| || | | | |||||| |||| | | |||||| |||
Sbjct 5414 GAGGAACCCTTAGATTTTCAGAGCATTGGATTCTCACCAATGTTTGTGTTACTCAAGCCA 5473
Query 120 GCATTCTCACTC--GCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACAC 177
|||||||||| || | | |||||||| |||| | | ||||| || || | |
Sbjct 5474 ACATTCTCACTTCTGCTTTA--TCCACCACTGC-TCACGCAGGTGCTTC-CCTCTAAGGC 5529
Query 178 G--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAAG 231
| ||||||| ||||| | || ||| | ||||||||||||| ||| |||| |
Sbjct 5530 GGAACGCTCCTCTACCGATGCATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA-G 5585
Query 232 CCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAG 291
||||| | ||| ||||||| | || || ||||||||||||| |||||||||||||
Sbjct 5586 CCCCGTT-CATCTTCGGCGCAAGCGCGCTCGATCAGTGAGCTATTATGCACTCTTTCAAG 5644
Query 292 GATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTG 351
| |||||||||| | || |||||||| | ||||| ||| | | || |||||| ||||
Sbjct 5645 GGTGGCTGCTTCTAGGCGAACCTCCTAGCTGTCTCTGCACCCCTACCTCCTTTATCACTA 5704
Query 352 AGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400
||| || |||||||||||| ||| ||||| ||| |||||||||||||
Sbjct 5705 AGTGGTCATTTAGGGGCCTTAACTGGTGATCCGGGTTGTTTCCCTCTCG 5753
>seq13492
Length=22571
Score = 145 bits (160), Expect = 2e-32
Identities = 116/140 (83%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318
|| || |||||||||||||||||||||||||||| |||||||||| | || |||||||||
Sbjct 3584 CTCGATCAGTGAGCTATTACGCACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTG 3525
Query 319 GTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGAT 378
| ||||| ||| | | || |||||| ||||||| || ||||||||||| ||| |
Sbjct 3524 GCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCCTTTTCTGGT 3465
Query 379 GATCTGGGCTGTTTCCCTCT 398
|||| |||||||||||||||
Sbjct 3464 GATCCGGGCTGTTTCCCTCT 3445
>seq23253
Length=55804
Score = 93.3 bits (102), Expect = 1e-16
Identities = 72/86 (84%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 259 CTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318
|| || |||||||||||||| ||||||||||||| |||||||||| | || |||||||||
Sbjct 52553 CTCGATCAGTGAGCTATTACACACTCTTTCAAGGGTGGCTGCTTCTAGGCAAACCTCCTG 52612
Query 319 GTTGTCTACGCAACTCCACATCCTTT 344
| ||||| ||| | | || ||||||
Sbjct 52613 GCTGTCTCTGCACCCCTACCTCCTTT 52638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1177126039552
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