Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01001821.1
Length=161
Score E
Sequences producing significant alignments: (Bits) Value
seq32794 122 7e-26
seq3498 91.5 1e-16
seq15144 84.2 2e-14
>seq32794
Length=503
Score = 122 bits (134), Expect = 7e-26
Identities = 123/160 (77%), Gaps = 0/160 (0%)
Strand=Plus/Minus
Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61
|||||||||| |||||||||| ||| | ||| ||| ||||||| |||||||||
Sbjct 245 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 186
Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121
| | || |||| ||| |||||||| ||||||| |||| |||||||| |||
Sbjct 185 GATCACGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 126
Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
|| ||||||||||||||| ||||||||||||| || ||||
Sbjct 125 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 86
>seq3498
Length=35339
Score = 91.5 bits (100), Expect = 1e-16
Identities = 115/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 4 AGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGT 63
|||||||| ||||||||| |||| | ||| ||| ||||||| |||||| |||
Sbjct 10393 AGTTGCAGCCTACAATCCAAACTAAGGACGGGTTTTTGGAGTTAGCTCACCCTCGAGGGA 10334
Query 64 TGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGA 123
| || |||| ||| || ||| | ||||| | |||| || ||||| |||||
Sbjct 10333 TCACGACCCTTTGTCCAGACTGTTGCAGCACGTGGGTCGCCCAGGGCACAAGGGACATGA 10274
Query 124 GGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161
||||| ||||||||| ||| |||||||||||| ||||
Sbjct 10273 TGACTTTACGTCATCCTCACATTCCTCCGGTTTATCAC 10236
>seq15144
Length=9343
Score = 84.2 bits (92), Expect = 2e-14
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142
|||||||| ||||||| |||| |||||||| ||||| ||||||||||||||| ||
Sbjct 3360 CCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCA 3301
Query 143 CCTTCCTCCGGTTTGTCAC 161
||||||||||| || ||||
Sbjct 3300 CCTTCCTCCGGCTTATCAC 3282
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415837800560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |