Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq32794 122 7e-26 seq3498 91.5 1e-16 seq15144 84.2 2e-14 >seq32794 Length=503 Score = 122 bits (134), Expect = 7e-26 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| ||| ||||||| ||||||||| Sbjct 245 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGG 186 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || |||| ||| |||||||| ||||||| |||| |||||||| ||| Sbjct 185 GATCACGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCAT 126 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || ||||||||||||||| ||||||||||||| || |||| Sbjct 125 GATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 86 >seq3498 Length=35339 Score = 91.5 bits (100), Expect = 1e-16 Identities = 115/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 4 AGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGT 63 |||||||| ||||||||| |||| | ||| ||| ||||||| |||||| ||| Sbjct 10393 AGTTGCAGCCTACAATCCAAACTAAGGACGGGTTTTTGGAGTTAGCTCACCCTCGAGGGA 10334 Query 64 TGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGA 123 | || |||| ||| || ||| | ||||| | |||| || ||||| ||||| Sbjct 10333 TCACGACCCTTTGTCCAGACTGTTGCAGCACGTGGGTCGCCCAGGGCACAAGGGACATGA 10274 Query 124 GGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||||| ||||||||| ||| |||||||||||| |||| Sbjct 10273 TGACTTTACGTCATCCTCACATTCCTCCGGTTTATCAC 10236 >seq15144 Length=9343 Score = 84.2 bits (92), Expect = 2e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCA 142 |||||||| ||||||| |||| |||||||| ||||| ||||||||||||||| || Sbjct 3360 CCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCATGATGACTTGACGTCATCCTCA 3301 Query 143 CCTTCCTCCGGTTTGTCAC 161 ||||||||||| || |||| Sbjct 3300 CCTTCCTCCGGCTTATCAC 3282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415837800560