Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq29079 197 3e-48
seq1481 170 5e-40
seq15005 165 2e-38
seq29539 163 7e-38
seq9098 116 9e-24
seq34706 86.0 2e-14
seq36566 73.4 1e-10
>seq29079
Length=112050
Score = 197 bits (218), Expect = 3e-48
Identities = 153/182 (84%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 14 CGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATAT 73
|| ||||||||| | | |||||||||| ||| | ||| |||| ||||||||||| || ||
Sbjct 30213 CGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAAGCTTTCGCCCATTGTGGAAAAT 30154
Query 74 TCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCA 133
|||||||||||||||||||||||||||| | || ||||||||| |||||||||| | |||
Sbjct 30153 TCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCATGTCTCAGTCCCAGTGTGGCCGATCA 30094
Query 134 TCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAA 193
||||||| ||||||||| ||||| || ||| ||| || ||| | | ||||||||||||
Sbjct 30093 TCCTCTCGGACCAGCTACGGATCATCACCTTGGTAAGCTATTGTCTCACCAACTAGCTAA 30034
Query 194 TC 195
||
Sbjct 30033 TC 30032
>seq1481
Length=19650
Score = 170 bits (188), Expect = 5e-40
Identities = 145/179 (81%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76
||||||||| | | ||||| |||| ||| | |||||| | ||| ||||| || || ||
Sbjct 3573 AGGCCTTCTACCTTCACGCTGCATTGCTTCGTCAGGCCTTCGCTCATTGCAGAAAATCCC 3514
Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136
||||||||||||||||||||||||||| |||||||| ||| ||| |||||| | ||||||
Sbjct 3513 CCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTTAGTCCCAATGTGGCGGATCATCC 3454
Query 137 TCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195
|||| ||||||||| |||| || ||| ||| || ||| | | ||||||||||||||
Sbjct 3453 TCTCGGACCAGCTACTGATCATCACCTTGGTAAGCTATTGGCTCACCAACTAGCTAATC 3395
>seq15005
Length=3975
Score = 165 bits (182), Expect = 2e-38
Identities = 153/193 (79%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61
|||||||| | | | | ||||||||| |||||| || |||| ||| ||||| |||||
Sbjct 823 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 882
Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121
||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| ||||
Sbjct 883 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 942
Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181
|||||||| |||||| |||||||||| | ||| | | || ||| ||| |||||
Sbjct 943 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 1002
Query 182 CCAACTAGCTAAT 194
||||| | |||||
Sbjct 1003 CCAACGACCTAAT 1015
>seq29539
Length=35504
Score = 163 bits (180), Expect = 7e-38
Identities = 282/404 (70%), Gaps = 32/404 (8%)
Strand=Plus/Plus
Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70
||||| ||||||||| | | |||||||||| || |||||||||| ||||||||| ||
Sbjct 3711 ACCCGTAGGCCTTCTACCTCCACGCGGCATTACTCCATCAGGCTTTCGCCCATTGCAGAA 3770
Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130
|||| | ||||| ||||| ||| |||| ||| ||||||||||||| ||| ||| ||
Sbjct 3771 AATTCTC-ACTGCGGCCTCTGGTAAGAGTTTGGGCCGTGTCTCAGTTT-AGTATGGTTGA 3828
Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190
|||||| ||| ||| ||||| ||| ||||||| || || ||| || | |||||||||
Sbjct 3829 TCATCCCCTCGGACTAGCTACTGATTGTCGCCTTGGCAAGCTATTGCCTCACCAACTAGC 3888
Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250
|||| || || || | ||| || | || ||| ||| |||| || |
Sbjct 3889 TAATTAGATGTGAGTCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTAA 3937
Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310
| || || | |||||||| |||||||||| ||| | ||| ||| ||||| |||
Sbjct 3938 G-CG-TACGGGGTATTAGTAGCCGTTTCCAGCTGTTGTTCCCTTCCCAAGGGCAGGTTCT 3995
Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370
| || ||||| | |||| ||| | ||| || || |||| |||
Sbjct 3996 TACACGTTACTTATTCGTCTACCATT------GGAAACACCA-----CTTC------CCG 4038
Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|| ||||||||||| ||| || |||||||| ||||| |||||
Sbjct 4039 TTTGACTTGCATGTATTAAGCATGCCGCCAATGTTCATCCTGAG 4082
>seq9098
Length=5062
Score = 116 bits (128), Expect = 9e-24
Identities = 131/174 (75%), Gaps = 1/174 (1%)
Strand=Plus/Plus
Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79
||||||||| || ||| || ||| ||| ||||| |||||||||| ||| ||||||||
Sbjct 3398 CCTTCTTCACTCATGCGATATTGCTTGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 3457
Query 80 CTGCTGCCTCC-CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTC 138
|||||||| || ||| |||| | ||||||||| | |||||||||||| ||||||
Sbjct 3458 CTGCTGCCCCCTCGTGCGAGTACAGGCCGTGTCTCTATCCCAGTGTGGCTGATCATCCAA 3517
Query 139 TCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTA 192
|||||||||| | ||| | | | ||| ||| ||||| ||||| | |||
Sbjct 3518 AAAGACCAGCTAAGCATCATTGGGTTGGTCAGCCTTTACCTGACCAACGACCTA 3571
>seq34706
Length=3060
Score = 86.0 bits (94), Expect = 2e-14
Identities = 111/154 (72%), Gaps = 17/154 (11%)
Strand=Plus/Plus
Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320
||||||||| ||||||| || ||| | ||||||| ||||| ||| | | ||||
Sbjct 384 GGTATTAGCAGCCGTTTCTAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTAC 443
Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380
||||||||| |||||| ||| || || |||| |||| ||||||||
Sbjct 444 TCACCCGTCTGCCACT------GGAAACACCA-----CTTC------CCGTCCGACTTGC 486
Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414
|||||||| || ||||||||||||||| |||||
Sbjct 487 ATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 520
>seq36566
Length=3262
Score = 73.4 bits (80), Expect = 1e-10
Identities = 86/115 (75%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79
||||||||| || ||| || | ||| ||||| || |||||| ||| || ||||
Sbjct 3013 CCTTCTTCACTCATGCGATATTATTAGATCTGGCTTTCGTCCATTGCCCAAGATCTCCCA 2954
Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCAT 134
| |||||| ||||| |||||| | ||||| ||||| ||||||||||| ||||
Sbjct 2953 CGGCTGCC-CCCGTGGGAGTCCGAGTCGTGTATCAGTCCCAGTGTGGCTAATCAT 2900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1221908008448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |