Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq29079 197 3e-48 seq1481 170 5e-40 seq15005 165 2e-38 seq29539 163 7e-38 seq9098 116 9e-24 seq34706 86.0 2e-14 seq36566 73.4 1e-10 >seq29079 Length=112050 Score = 197 bits (218), Expect = 3e-48 Identities = 153/182 (84%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 14 CGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATAT 73 || ||||||||| | | |||||||||| ||| | ||| |||| ||||||||||| || || Sbjct 30213 CGTAGGCCTTCTACCTCCACGCGGCATTGCTCCGTCAAGCTTTCGCCCATTGTGGAAAAT 30154 Query 74 TCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCA 133 |||||||||||||||||||||||||||| | || ||||||||| |||||||||| | ||| Sbjct 30153 TCCCCACTGCTGCCTCCCGTAGGAGTCTAGGCCATGTCTCAGTCCCAGTGTGGCCGATCA 30094 Query 134 TCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAA 193 ||||||| ||||||||| ||||| || ||| ||| || ||| | | |||||||||||| Sbjct 30093 TCCTCTCGGACCAGCTACGGATCATCACCTTGGTAAGCTATTGTCTCACCAACTAGCTAA 30034 Query 194 TC 195 || Sbjct 30033 TC 30032 >seq1481 Length=19650 Score = 170 bits (188), Expect = 5e-40 Identities = 145/179 (81%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 17 AGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCC 76 ||||||||| | | ||||| |||| ||| | |||||| | ||| ||||| || || || Sbjct 3573 AGGCCTTCTACCTTCACGCTGCATTGCTTCGTCAGGCCTTCGCTCATTGCAGAAAATCCC 3514 Query 77 CCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCC 136 ||||||||||||||||||||||||||| |||||||| ||| ||| |||||| | |||||| Sbjct 3513 CCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTTAGTCCCAATGTGGCGGATCATCC 3454 Query 137 TCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||| ||||||||| |||| || ||| ||| || ||| | | |||||||||||||| Sbjct 3453 TCTCGGACCAGCTACTGATCATCACCTTGGTAAGCTATTGGCTCACCAACTAGCTAATC 3395 >seq15005 Length=3975 Score = 165 bits (182), Expect = 2e-38 Identities = 153/193 (79%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 823 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 882 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 883 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 942 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 943 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 1002 Query 182 CCAACTAGCTAAT 194 ||||| | ||||| Sbjct 1003 CCAACGACCTAAT 1015 >seq29539 Length=35504 Score = 163 bits (180), Expect = 7e-38 Identities = 282/404 (70%), Gaps = 32/404 (8%) Strand=Plus/Plus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||||| | | |||||||||| || |||||||||| ||||||||| || Sbjct 3711 ACCCGTAGGCCTTCTACCTCCACGCGGCATTACTCCATCAGGCTTTCGCCCATTGCAGAA 3770 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||| | ||||| ||||| ||| |||| ||| ||||||||||||| ||| ||| || Sbjct 3771 AATTCTC-ACTGCGGCCTCTGGTAAGAGTTTGGGCCGTGTCTCAGTTT-AGTATGGTTGA 3828 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||| ||| ||| ||||| ||| ||||||| || || ||| || | ||||||||| Sbjct 3829 TCATCCCCTCGGACTAGCTACTGATTGTCGCCTTGGCAAGCTATTGCCTCACCAACTAGC 3888 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 |||| || || || | ||| || | || ||| ||| |||| || | Sbjct 3889 TAATTAGATGTGAGTCCCTCC--------TCGGGCGGA--TTCCTCCT-TTTGCTCCTAA 3937 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | || || | |||||||| |||||||||| ||| | ||| ||| ||||| ||| Sbjct 3938 G-CG-TACGGGGTATTAGTAGCCGTTTCCAGCTGTTGTTCCCTTCCCAAGGGCAGGTTCT 3995 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | || ||||| | |||| ||| | ||| || || |||| ||| Sbjct 3996 TACACGTTACTTATTCGTCTACCATT------GGAAACACCA-----CTTC------CCG 4038 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || ||||||||||| ||| || |||||||| ||||| ||||| Sbjct 4039 TTTGACTTGCATGTATTAAGCATGCCGCCAATGTTCATCCTGAG 4082 >seq9098 Length=5062 Score = 116 bits (128), Expect = 9e-24 Identities = 131/174 (75%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| || ||| || ||| ||| ||||| |||||||||| ||| |||||||| Sbjct 3398 CCTTCTTCACTCATGCGATATTGCTTGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 3457 Query 80 CTGCTGCCTCC-CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTC 138 |||||||| || ||| |||| | ||||||||| | |||||||||||| |||||| Sbjct 3458 CTGCTGCCCCCTCGTGCGAGTACAGGCCGTGTCTCTATCCCAGTGTGGCTGATCATCCAA 3517 Query 139 TCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTA 192 |||||||||| | ||| | | | ||| ||| ||||| ||||| | ||| Sbjct 3518 AAAGACCAGCTAAGCATCATTGGGTTGGTCAGCCTTTACCTGACCAACGACCTA 3571 >seq34706 Length=3060 Score = 86.0 bits (94), Expect = 2e-14 Identities = 111/154 (72%), Gaps = 17/154 (11%) Strand=Plus/Plus Query 261 GGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTAC 320 ||||||||| ||||||| || ||| | ||||||| ||||| ||| | | |||| Sbjct 384 GGTATTAGCAGCCGTTTCTAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTAC 443 Query 321 TCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGC 380 ||||||||| |||||| ||| || || |||| |||| |||||||| Sbjct 444 TCACCCGTCTGCCACT------GGAAACACCA-----CTTC------CCGTCCGACTTGC 486 Query 381 ATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||| || ||||||||||||||| ||||| Sbjct 487 ATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 520 >seq36566 Length=3262 Score = 73.4 bits (80), Expect = 1e-10 Identities = 86/115 (75%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| || ||| || | ||| ||||| || |||||| ||| || |||| Sbjct 3013 CCTTCTTCACTCATGCGATATTATTAGATCTGGCTTTCGTCCATTGCCCAAGATCTCCCA 2954 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCAT 134 | |||||| ||||| |||||| | ||||| ||||| ||||||||||| |||| Sbjct 2953 CGGCTGCC-CCCGTGGGAGTCCGAGTCGTGTATCAGTCCCAGTGTGGCTAATCAT 2900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1221908008448