Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq15005 266 1e-68
seq29539 221 4e-55
seq29079 210 7e-52
seq1481 185 3e-44
seq9098 168 2e-39
seq33642 84.2 7e-14
>seq15005
Length=3975
Score = 266 bits (294), Expect = 1e-68
Identities = 257/327 (79%), Gaps = 5/327 (2%)
Strand=Plus/Minus
Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227
||||| | |||||| |||||| |||| |||||| | | ||| |||| | || ||
Sbjct 1015 ATTAGGTCGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 956
Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287
||||| |||||| ||| |||||||||||| || ||||| ||||| |||||||||||||
Sbjct 955 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 896
Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345
||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | |
Sbjct 895 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 836
Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403
| | | |||||||||| || || | | ||| ||||| | ||| ||||| |||||||
Sbjct 835 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 776
Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463
||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| |
Sbjct 775 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 716
Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490
|| |||||||||||| |||||| |||
Sbjct 715 CT-GGGCGTAAAGGGCACGTAGGCGGT 690
>seq29539
Length=35504
Score = 221 bits (244), Expect = 4e-55
Identities = 264/352 (75%), Gaps = 6/352 (2%)
Strand=Plus/Minus
Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209
|||| ||| | | ||| |||||||||||||| ||| || |||| |||||||||| |||
Sbjct 3910 AGGAGGGACTCACATCTAATTAGCTAGTTGGTGAGGCAATAGCTTGCCAAGGCGACAATC 3851
Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269
|||||| | ||| || ||||| ||| | | ||||||||||||| |||||||| ||
Sbjct 3850 AGTAGCTAGTCCGAGGGGATGATCAACCATACT-AAACTGAGACACGGCCCAAACTCTTA 3792
Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329
| ||||| ||||| | |||| || |||||||| ||||||||||| || || ||||||
Sbjct 3791 CCAGAGGCCGCAGT-GAGAATTTTCTGCAATGGGCGAAAGCCTGATGGAGTAATGCCGCG 3733
Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTA 387
|| | |||||||| |||||| | || ||| | ||| |||| | ||||| ||||
Sbjct 3732 TGGAGGTAGAAGGCCTACGGGTCATGAACTTCTTTTCTCGGAGAAGAAACAATGATGGTA 3673
Query 388 CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTA 447
|| ||| |||| | |||||| ||||||||| | ||| ||||||| ||| || |
Sbjct 3672 TATGGGGAATAAGCATC-ACTAACTTTGTGCCAGCATCTGCGTTAATACGGAGGATGCAA 3614
Query 448 GCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499
| ||||| |||||| | | |||| ||||| || |||||||| || ||||||
Sbjct 3613 GTGTTATTCGGAATGA-TAGGGCCTAAAGTGTTTGTAGGTGGCTTTTTAAGT 3563
>seq29079
Length=112050
Score = 210 bits (232), Expect = 7e-52
Identities = 185/230 (80%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| || || ||||||||||| || |||| ||||| |
Sbjct 30025 CGCGTCTGATTAGCTAGTTGGTGAGACAATAGCTTACCAAGGTGATGATCCGTAGCTGGT 30084
Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279
| |||||| |||||||||||| ||| ||||||||| || | | |||||||||||||||||
Sbjct 30085 CCGAGAGGATGATCGGCCACACTGGGACTGAGACATGGCCTAGACTCCTACGGGAGGCAG 30144
Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339
||||||||||| || |||||||||| ||||| ||| | ||||| |||||||| | ||
Sbjct 30145 CAGTGGGGAATTTTCCACAATGGGCGAAAGCTTGACGGAGCAATGCCGCGTGGAGGTAGA 30204
Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTA 387
|||||| || |||| || ||| | | || |||| | ||||||||||
Sbjct 30205 AGGCCTACGATTCGTGAACTTCTTTTCCCAGAGAAGAAACAATGACGGTA 30254
>seq1481
Length=19650
Score = 185 bits (204), Expect = 3e-44
Identities = 169/212 (80%), Gaps = 1/212 (0%)
Strand=Plus/Plus
Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223
|||||||||||||||||| || || ||||||||||| || |||||||||| | | ||
Sbjct 3392 TCTGATTAGCTAGTTGGTGAGCCAATAGCTTACCAAGGTGATGATCAGTAGCTGGTCCGA 3451
Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283
|||| ||||| |||||||||| ||| |||||||| ||| |||||||||||||||||||||
Sbjct 3452 GAGGATGATCCGCCACATTGGGACTAAGACACGGCCCAGACTCCTACGGGAGGCAGCAGT 3511
Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343
|||| || || ||||| || || |||||| | ||||| || |||||| | ||||||
Sbjct 3512 GGGGGATTTTCTGCAATGAGCGAAGGCCTGACGAAGCAATGCAGCGTGAAGGTAGAAGGC 3571
Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG 375
| | ||||||| || ||| | | || ||||
Sbjct 3572 C-TAGGGTCGTGAACTTCTTTTCCCAGAGAAG 3602
>seq9098
Length=5062
Score = 168 bits (186), Expect = 2e-39
Identities = 239/330 (72%), Gaps = 11/330 (3%)
Strand=Plus/Minus
Query 170 TAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGT 229
||| | |||||| |||||| |||| ||||| | | ||| |||| | || || |
Sbjct 3571 TAGGTCGTTGGTCAGGTAAAGGCTGACCAACCCAATGATGCTTAGCTGGTCTTTTTGGAT 3512
Query 230 GATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG-GGAGGCAGCAGTGGGGA 288
|||| |||||| ||| | ||||||||| | |||| ||| || ||||||||||||||
Sbjct 3511 GATCAGCCACACTGGGATAGAGACACGGCCTGTACTCGCACGAGGGGGCAGCAGTGGGGA 3452
Query 289 ATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--TT 346
|| ||| ||||||||| |||||| ||| ||||| ||| |||| || ||||| | |
Sbjct 3451 ATCTTGGACAATGGGCGAAAGCCCGATCAAGCAATATCGCATGAGTGAAGAAGGGCAATG 3392
Query 347 CGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404
| | |||||||||| | || | | |||| ||||| ||| ||||| ||||||||
Sbjct 3391 TCGCTTGTAAAGCTCTTTTATCGAGTGCGAGATCATGACAAGACTCGAGGAAGAAGCCCC 3332
Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATAC----GTAGGGGGCTAGCGTTATCCGGAA 460
||||||| |||| ||||| | || |||| || | | |||| || ||| | || ||
Sbjct 3331 -GCTAACTCCGTGTCAGCATCTGCAGTAAGACCAGGGGGGAGGGCAAGTGTTCTTCGAAA 3273
Query 461 TTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490
| ||| ||||||||||||| | |||| |||
Sbjct 3272 TGACT-GGGCGTAAAGGGTACATAGGCGGT 3244
>seq33642
Length=22259
Score = 84.2 bits (92), Expect = 7e-14
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Minus
Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219
|||||||||||||||||||||| ||| || ||||| |||||| | |||||||||| |
Sbjct 21977 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTATCAAGGCAATGATCAGTAGCTGGT 21918
Query 220 CTGAGAGGGTGATCGGCCA 238
| |||||| ||||| ||||
Sbjct 21917 CCGAGAGGATGATCAGCCA 21899
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1496997245952
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |