Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq15005 266 1e-68 seq29539 221 4e-55 seq29079 210 7e-52 seq1481 185 3e-44 seq9098 168 2e-39 seq33642 84.2 7e-14 >seq15005 Length=3975 Score = 266 bits (294), Expect = 1e-68 Identities = 257/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Minus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| | |||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 1015 ATTAGGTCGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 956 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 955 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 896 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 895 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 836 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 835 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 776 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 775 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 716 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 715 CT-GGGCGTAAAGGGCACGTAGGCGGT 690 >seq29539 Length=35504 Score = 221 bits (244), Expect = 4e-55 Identities = 264/352 (75%), Gaps = 6/352 (2%) Strand=Plus/Minus Query 150 AGGATAGACCCGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATC 209 |||| ||| | | ||| |||||||||||||| ||| || |||| |||||||||| ||| Sbjct 3910 AGGAGGGACTCACATCTAATTAGCTAGTTGGTGAGGCAATAGCTTGCCAAGGCGACAATC 3851 Query 210 AGTAGCCGACCTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTA 269 |||||| | ||| || ||||| ||| | | ||||||||||||| |||||||| || Sbjct 3850 AGTAGCTAGTCCGAGGGGATGATCAACCATACT-AAACTGAGACACGGCCCAAACTCTTA 3792 Query 270 CGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCG 329 | ||||| ||||| | |||| || |||||||| ||||||||||| || || |||||| Sbjct 3791 CCAGAGGCCGCAGT-GAGAATTTTCTGCAATGGGCGAAAGCCTGATGGAGTAATGCCGCG 3733 Query 330 TGAGCGATGAAGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTA 387 || | |||||||| |||||| | || ||| | ||| |||| | ||||| |||| Sbjct 3732 TGGAGGTAGAAGGCCTACGGGTCATGAACTTCTTTTCTCGGAGAAGAAACAATGATGGTA 3673 Query 388 CTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTA 447 || ||| |||| | |||||| ||||||||| | ||| ||||||| ||| || | Sbjct 3672 TATGGGGAATAAGCATC-ACTAACTTTGTGCCAGCATCTGCGTTAATACGGAGGATGCAA 3614 Query 448 GCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 | ||||| |||||| | | |||| ||||| || |||||||| || |||||| Sbjct 3613 GTGTTATTCGGAATGA-TAGGGCCTAAAGTGTTTGTAGGTGGCTTTTTAAGT 3563 >seq29079 Length=112050 Score = 210 bits (232), Expect = 7e-52 Identities = 185/230 (80%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| || || ||||||||||| || |||| ||||| | Sbjct 30025 CGCGTCTGATTAGCTAGTTGGTGAGACAATAGCTTACCAAGGTGATGATCCGTAGCTGGT 30084 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| |||||||||||| ||| ||||||||| || | | ||||||||||||||||| Sbjct 30085 CCGAGAGGATGATCGGCCACACTGGGACTGAGACATGGCCTAGACTCCTACGGGAGGCAG 30144 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || |||||||||| ||||| ||| | ||||| |||||||| | || Sbjct 30145 CAGTGGGGAATTTTCCACAATGGGCGAAAGCTTGACGGAGCAATGCCGCGTGGAGGTAGA 30204 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG--ATAATGACGGTA 387 |||||| || |||| || ||| | | || |||| | |||||||||| Sbjct 30205 AGGCCTACGATTCGTGAACTTCTTTTCCCAGAGAAGAAACAATGACGGTA 30254 >seq1481 Length=19650 Score = 185 bits (204), Expect = 3e-44 Identities = 169/212 (80%), Gaps = 1/212 (0%) Strand=Plus/Plus Query 164 TCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGA 223 |||||||||||||||||| || || ||||||||||| || |||||||||| | | || Sbjct 3392 TCTGATTAGCTAGTTGGTGAGCCAATAGCTTACCAAGGTGATGATCAGTAGCTGGTCCGA 3451 Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| ||||| |||||||||| ||| |||||||| ||| ||||||||||||||||||||| Sbjct 3452 GAGGATGATCCGCCACATTGGGACTAAGACACGGCCCAGACTCCTACGGGAGGCAGCAGT 3511 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGC 343 |||| || || ||||| || || |||||| | ||||| || |||||| | |||||| Sbjct 3512 GGGGGATTTTCTGCAATGAGCGAAGGCCTGACGAAGCAATGCAGCGTGAAGGTAGAAGGC 3571 Query 344 CTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG 375 | | ||||||| || ||| | | || |||| Sbjct 3572 C-TAGGGTCGTGAACTTCTTTTCCCAGAGAAG 3602 >seq9098 Length=5062 Score = 168 bits (186), Expect = 2e-39 Identities = 239/330 (72%), Gaps = 11/330 (3%) Strand=Plus/Minus Query 170 TAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGGGT 229 ||| | |||||| |||||| |||| ||||| | | ||| |||| | || || | Sbjct 3571 TAGGTCGTTGGTCAGGTAAAGGCTGACCAACCCAATGATGCTTAGCTGGTCTTTTTGGAT 3512 Query 230 GATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACG-GGAGGCAGCAGTGGGGA 288 |||| |||||| ||| | ||||||||| | |||| ||| || |||||||||||||| Sbjct 3511 GATCAGCCACACTGGGATAGAGACACGGCCTGTACTCGCACGAGGGGGCAGCAGTGGGGA 3452 Query 289 ATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--TT 346 || ||| ||||||||| |||||| ||| ||||| ||| |||| || ||||| | | Sbjct 3451 ATCTTGGACAATGGGCGAAAGCCCGATCAAGCAATATCGCATGAGTGAAGAAGGGCAATG 3392 Query 347 CGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCCC 404 | | |||||||||| | || | | |||| ||||| ||| ||||| |||||||| Sbjct 3391 TCGCTTGTAAAGCTCTTTTATCGAGTGCGAGATCATGACAAGACTCGAGGAAGAAGCCCC 3332 Query 405 GGCTAACTACGTGCCAGCAGCCGCGGTAATAC----GTAGGGGGCTAGCGTTATCCGGAA 460 ||||||| |||| ||||| | || |||| || | | |||| || ||| | || || Sbjct 3331 -GCTAACTCCGTGTCAGCATCTGCAGTAAGACCAGGGGGGAGGGCAAGTGTTCTTCGAAA 3273 Query 461 TTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 | ||| ||||||||||||| | |||| ||| Sbjct 3272 TGACT-GGGCGTAAAGGGTACATAGGCGGT 3244 >seq33642 Length=22259 Score = 84.2 bits (92), Expect = 7e-14 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| ||| || ||||| |||||| | |||||||||| | Sbjct 21977 CGCGTCTGATTAGCTAGTTGGTGAGGCAATAGCTTATCAAGGCAATGATCAGTAGCTGGT 21918 Query 220 CTGAGAGGGTGATCGGCCA 238 | |||||| ||||| |||| Sbjct 21917 CCGAGAGGATGATCAGCCA 21899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496997245952