Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq15005 221 3e-55
seq9098 123 6e-26
>seq15005
Length=3975
Score = 221 bits (244), Expect = 3e-55
Identities = 255/340 (75%), Gaps = 10/340 (3%)
Strand=Plus/Minus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61
||| ||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||
Sbjct 792 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 733
Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121
|| ||| | |||||| ||||||||||||||| |||||| ||| | || | |||
Sbjct 732 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 673
Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177
|||| | | | || | | ||| |||| | ||||| | || || |||||
Sbjct 672 AAAGTC---GCCAAAAACTGGTGGAATGCTCTCGAAACCCATTCA---CTTGAGTGAGAC 619
Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237
|| || ||||||||| | |||||| |||||||| || |||| | | |||||| |||
Sbjct 618 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAA 559
Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297
|||||||| ||| |||| || ||| ||| || ||||||| |||||||| ||
Sbjct 558 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 499
Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
| ||||||||||||||||||||||| ||||||||||||||
Sbjct 498 CGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 459
>seq9098
Length=5062
Score = 123 bits (136), Expect = 6e-26
Identities = 237/343 (69%), Gaps = 26/343 (8%)
Strand=Plus/Minus
Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG-- 59
||| ||||| ||||||||| |||||| |||| ||||| | || |||| || |||||
Sbjct 3349 ACTCGAGGAAGAAGCCCCG-CTAACTCCGTGTCAGCATCTGCAGTAAGACCAGGGGGGAG 3291
Query 60 --CTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGA 117
| || ||| | || ||| |||||||||||||||| | |||| ||| | | || |
Sbjct 3290 GGCAAGTGTTCTTCGAAATGACTGGGCGTAAAGGGTACATAGGCGGTGAATCAGGTTGAA 3231
Query 118 GGTGAAAGGCTATGGCTCAACCCCGG--GACTGCTTTTGAAACTGCAGGGCTAGAGTGCA 175
||||||| | || ||| | || || |||| | |||| | || | ||
Sbjct 3230 AGTGAAAGTC----GCCCAAAACTGGTGGAATGCTCTCGAAA-TCCA---------TTCA 3185
Query 176 GGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACC 235
| | ||||||||| |||||| |||||||| | |||| | | |||||| ||
Sbjct 3184 CTTGAG---AGTGGAATTTTGTGTGTAGGGGTGAAATCCAGAGATCTACGAAGGAACGCC 3128
Query 236 AGTGGCGAAGGCGGCTTGCT-GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGC 294
| ||||||| ||| || || | || | ||| ||| || | ||||| ||||| |
Sbjct 3127 AAAAGCGAAGGTAGCTCTCTAGGTCCCTACC-GACGCTGGGGTGCAAAAGCAAGGGGAAC 3069
Query 295 AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
||| ||||||||||||| |||||||| ||||||||||||||
Sbjct 3068 GAACGGGATTAGATACCCAAGTAGTCCATGCCGTAAACGATGA 3026
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1202715736064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |