Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq15005 221 3e-55 seq9098 123 6e-26 >seq15005 Length=3975 Score = 221 bits (244), Expect = 3e-55 Identities = 255/340 (75%), Gaps = 10/340 (3%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 792 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 733 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | ||| Sbjct 732 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTG 673 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || ||||| Sbjct 672 AAAGTC---GCCAAAAACTGGTGGAATGCTCTCGAAACCCATTCA---CTTGAGTGAGAC 619 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| || |||| | | |||||| ||| Sbjct 618 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAA 559 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| || ||||||| |||||||| || Sbjct 558 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAA 499 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||||||||||||||||||||||| |||||||||||||| Sbjct 498 CGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 459 >seq9098 Length=5062 Score = 123 bits (136), Expect = 6e-26 Identities = 237/343 (69%), Gaps = 26/343 (8%) Strand=Plus/Minus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGG-- 59 ||| ||||| ||||||||| |||||| |||| ||||| | || |||| || ||||| Sbjct 3349 ACTCGAGGAAGAAGCCCCG-CTAACTCCGTGTCAGCATCTGCAGTAAGACCAGGGGGGAG 3291 Query 60 --CTAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGA 117 | || ||| | || ||| |||||||||||||||| | |||| ||| | | || | Sbjct 3290 GGCAAGTGTTCTTCGAAATGACTGGGCGTAAAGGGTACATAGGCGGTGAATCAGGTTGAA 3231 Query 118 GGTGAAAGGCTATGGCTCAACCCCGG--GACTGCTTTTGAAACTGCAGGGCTAGAGTGCA 175 ||||||| | || ||| | || || |||| | |||| | || | || Sbjct 3230 AGTGAAAGTC----GCCCAAAACTGGTGGAATGCTCTCGAAA-TCCA---------TTCA 3185 Query 176 GGAGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACC 235 | | ||||||||| |||||| |||||||| | |||| | | |||||| || Sbjct 3184 CTTGAG---AGTGGAATTTTGTGTGTAGGGGTGAAATCCAGAGATCTACGAAGGAACGCC 3128 Query 236 AGTGGCGAAGGCGGCTTGCT-GGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGC 294 | ||||||| ||| || || | || | ||| ||| || | ||||| ||||| | Sbjct 3127 AAAAGCGAAGGTAGCTCTCTAGGTCCCTACC-GACGCTGGGGTGCAAAAGCAAGGGGAAC 3069 Query 295 AAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||| ||||||||||||| |||||||| |||||||||||||| Sbjct 3068 GAACGGGATTAGATACCCAAGTAGTCCATGCCGTAAACGATGA 3026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202715736064