Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq9766 306 7e-81
seq28435 284 2e-74
seq21713 215 1e-53
seq15820 75.2 2e-11
>seq9766
Length=43015
Score = 306 bits (338), Expect = 7e-81
Identities = 260/317 (82%), Gaps = 14/317 (4%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCC------CGCTTTGGCGGGTCGCCGGCT 73
|| |||||||| | |||||||| |||| | || | | | |||| || |||
Sbjct 38099 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGG----CCAGCT 38154
Query 74 TCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131
||||||||||||||| | ||| | ||| | |||||||||||||||||||||||||||||
Sbjct 38155 TCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGA 38213
Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191
||||||||||||||||||||||||||||||||||||||| | |||||||| || |
Sbjct 38214 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGC 38273
Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251
|||||||| ||| | ||||||||| | ||| | ||||| |||||||||| ||||||
Sbjct 38274 CTTGGCCGACAGGCCAAGGTAATCTT-TAAAATTTCATCGTGATGGGGATAGATCATTGC 38332
Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311
|||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| ||
Sbjct 38333 AATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTA 38392
Query 312 CGTCCCTGCCCTTTGTA 328
|||||||||||||||||
Sbjct 38393 CGTCCCTGCCCTTTGTA 38409
>seq28435
Length=1661
Score = 284 bits (314), Expect = 2e-74
Identities = 221/260 (85%), Gaps = 4/260 (2%)
Strand=Plus/Plus
Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128
|||||||| ||||||||| | ||| | ||| | |||||||||||||||||| |||||||
Sbjct 875 GCTTCTTAAAGGGACTATGGCTGCTTAGGCCAA-GGAAGTTTGAGGCAATAATAGGTCTG 933
Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188
||||||||||||||||| ||||||||||||||| |||||||| | |||||||| ||
Sbjct 934 TGATGCCCTTAGATGTTTTGGGCCGCACGCGCGTTACACTGATGTATTCAACGAGTCTAT 993
Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248
|||||| || ||| | |||||||||| | ||| | ||||| |||||||||| |||
Sbjct 994 AGCCTTGGTCGATAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCAT 1052
Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308
||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| ||||||||
Sbjct 1053 TGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGA 1112
Query 309 TTACGTCCCTGCCCTTTGTA 328
|||||||||||||||||||
Sbjct 1113 CTACGTCCCTGCCCTTTGTA 1132
>seq21713
Length=4003
Score = 215 bits (238), Expect = 1e-53
Identities = 203/255 (80%), Gaps = 14/255 (5%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCC------CGCTTTGGCGGGTCGCCGGCT 73
|| |||||||| | |||||||| |||| | || | | | |||| || |||
Sbjct 2030 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGG----CCAGCT 1975
Query 74 TCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131
||||||||||||||| | ||| | ||| | |||||||||||||||||||||||||||||
Sbjct 1974 TCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGA 1916
Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191
||||||||||||||||||||||||||||||||||||||| | |||||||| || |
Sbjct 1915 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGC 1856
Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251
|||||||| ||| | |||||||||| | ||| | ||||| |||||||||| ||||||
Sbjct 1855 CTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGC 1797
Query 252 AATTATTGCTCTTCA 266
|||| ||| ||||||
Sbjct 1796 AATTGTTGGTCTTCA 1782
>seq15820
Length=41782
Score = 75.2 bits (82), Expect = 2e-11
Identities = 56/66 (85%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 263 TTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCC 322
||||||||||||| ||||||||| ||| ||||||| | |||||| ||| |||||| ||
Sbjct 12056 TTCAACGAGGAATTCCTAGTAAGTGCGAGTCATCAATTCACGTTGACTACATCCCTGTCC 11997
Query 323 TTTGTA 328
||||||
Sbjct 11996 TTTGTA 11991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 946818770944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |