Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq9766 306 7e-81 seq28435 284 2e-74 seq21713 215 1e-53 seq15820 75.2 2e-11 >seq9766 Length=43015 Score = 306 bits (338), Expect = 7e-81 Identities = 260/317 (82%), Gaps = 14/317 (4%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCC------CGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || | | | |||| || ||| Sbjct 38099 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGG----CCAGCT 38154 Query 74 TCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||| Sbjct 38155 TCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGA 38213 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||||||||||||||||||||||||||||| | |||||||| || | Sbjct 38214 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGC 38273 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||||||| ||| | ||||||||| | ||| | ||||| |||||||||| |||||| Sbjct 38274 CTTGGCCGACAGGCCAAGGTAATCTT-TAAAATTTCATCGTGATGGGGATAGATCATTGC 38332 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| || Sbjct 38333 AATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTA 38392 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 38393 CGTCCCTGCCCTTTGTA 38409 >seq28435 Length=1661 Score = 284 bits (314), Expect = 2e-74 Identities = 221/260 (85%), Gaps = 4/260 (2%) Strand=Plus/Plus Query 71 GCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTG 128 |||||||| ||||||||| | ||| | ||| | |||||||||||||||||| ||||||| Sbjct 875 GCTTCTTAAAGGGACTATGGCTGCTTAGGCCAA-GGAAGTTTGAGGCAATAATAGGTCTG 933 Query 129 TGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCAT 188 ||||||||||||||||| ||||||||||||||| |||||||| | |||||||| || Sbjct 934 TGATGCCCTTAGATGTTTTGGGCCGCACGCGCGTTACACTGATGTATTCAACGAGTCTAT 993 Query 189 CACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 |||||| || ||| | |||||||||| | ||| | ||||| |||||||||| ||| Sbjct 994 AGCCTTGGTCGATAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCAT 1052 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| Sbjct 1053 TGCAATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGA 1112 Query 309 TTACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 1113 CTACGTCCCTGCCCTTTGTA 1132 >seq21713 Length=4003 Score = 215 bits (238), Expect = 1e-53 Identities = 203/255 (80%), Gaps = 14/255 (5%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCC------CGCTTTGGCGGGTCGCCGGCT 73 || |||||||| | |||||||| |||| | || | | | |||| || ||| Sbjct 2030 GAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGGTACCCCTCCGCGG----CCAGCT 1975 Query 74 TCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||| Sbjct 1974 TCTTAGAGGGACTATGGCCGCTTAGGCCAA-GGAAGTTTGAGGCAATAACAGGTCTGTGA 1916 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||||||||||||||||||||||||||||| | |||||||| || | Sbjct 1915 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGC 1856 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||| Sbjct 1855 CTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGC 1797 Query 252 AATTATTGCTCTTCA 266 |||| ||| |||||| Sbjct 1796 AATTGTTGGTCTTCA 1782 >seq15820 Length=41782 Score = 75.2 bits (82), Expect = 2e-11 Identities = 56/66 (85%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 263 TTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCC 322 ||||||||||||| ||||||||| ||| ||||||| | |||||| ||| |||||| || Sbjct 12056 TTCAACGAGGAATTCCTAGTAAGTGCGAGTCATCAATTCACGTTGACTACATCCCTGTCC 11997 Query 323 TTTGTA 328 |||||| Sbjct 11996 TTTGTA 11991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946818770944