Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq22748 181 4e-43 seq1391 104 8e-20 seq13492 89.7 2e-15 seq5914 78.8 3e-12 >seq22748 Length=18834 Score = 181 bits (200), Expect = 4e-43 Identities = 388/571 (68%), Gaps = 38/571 (7%) Strand=Plus/Minus Query 14 GGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG 73 |||| | ||| ||| | | |||||||| | |||||||| ||||| ||||||||||| Sbjct 14432 GGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAG 14373 Query 74 GTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCT 133 | ||| | || |||||||||||||| ||| |||||||| ||| || ||||||| | Sbjct 14372 CTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTT 14313 Query 134 GTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATT 193 |||| ||||||||||| || | | ||| || |||||||||||| |||||| || Sbjct 14312 GTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTT 14253 Query 194 TAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTTATGGCTAGGG-G 247 ||| || ||| | || |||| |||||| ||||||||| || ||| Sbjct 14252 GAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCC 14198 Query 248 GTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------GCATCAGTTTTAC 299 | | ||| ||||||| | |||||||| |||| | ||| | || Sbjct 14197 GCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGATCTCAAAATAAC 14140 Query 300 CGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGA 348 | || |||||| ||||| | |||| | | | ||||||| || | Sbjct 14139 AGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACA 14080 Query 349 ATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATT 408 ||||| | ||||||||||||| ||||||| ||| ||| | | || || || | | Sbjct 14079 GCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGT 14022 Query 409 GCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGC 468 || ||||||| |||| ||| || | |||||||||| | || ||||||||||||| ||| Sbjct 14021 GCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGC 13963 Query 469 TCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAG 528 ||||| ||||| || ||| || || | |||| |||| ||| ||||||| | Sbjct 13962 TCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTG 13904 Query 529 TGGGATCATTTATATG-ATCGGTAGGGGAGC 558 |||||| | | ||| |||||||||||||| Sbjct 13903 TGGGAT-GTAAAAATGCATCGGTAGGGGAGC 13874 Score = 181 bits (200), Expect = 4e-43 Identities = 388/571 (68%), Gaps = 38/571 (7%) Strand=Plus/Minus Query 14 GGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG 73 |||| | ||| ||| | | |||||||| | |||||||| ||||| ||||||||||| Sbjct 16897 GGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAG 16838 Query 74 GTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCT 133 | ||| | || |||||||||||||| ||| |||||||| ||| || ||||||| | Sbjct 16837 CTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTT 16778 Query 134 GTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATT 193 |||| ||||||||||| || | | ||| || |||||||||||| |||||| || Sbjct 16777 GTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTT 16718 Query 194 TAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTTATGGCTAGGG-G 247 ||| || ||| | || |||| |||||| ||||||||| || ||| Sbjct 16717 GAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCC 16663 Query 248 GTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------GCATCAGTTTTAC 299 | | ||| ||||||| | |||||||| |||| | ||| | || Sbjct 16662 GCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGATCTCAAAATAAC 16605 Query 300 CGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGA 348 | || |||||| ||||| | |||| | | | ||||||| || | Sbjct 16604 AGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACA 16545 Query 349 ATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATT 408 ||||| | ||||||||||||| ||||||| ||| ||| | | || || || | | Sbjct 16544 GCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGT 16487 Query 409 GCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGC 468 || ||||||| |||| ||| || | |||||||||| | || ||||||||||||| ||| Sbjct 16486 GCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGC 16428 Query 469 TCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAG 528 ||||| ||||| || ||| || || | |||| |||| ||| ||||||| | Sbjct 16427 TCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTG 16369 Query 529 TGGGATCATTTATATG-ATCGGTAGGGGAGC 558 |||||| | | ||| |||||||||||||| Sbjct 16368 TGGGAT-GTAAAAATGCATCGGTAGGGGAGC 16339 >seq1391 Length=23006 Score = 104 bits (114), Expect = 8e-20 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395 ||||||| || || ||||| | ||| ||||||||| ||||||| || ||| | | | Sbjct 5753 CGAGAGGGAAACAACCCGGATCACCAGTTAAGGCCCCTAAATGACCACTTAGTGATA--A 5696 Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455 | || || | ||| |||||||||||| ||| || | |||||||||| | || |||| Sbjct 5695 AGGAGGTAGGGGTGCAGAGACAGCTAGGAGGTTCGCCTAGAAGCAGCCA-CCCTTGAAAG 5637 Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515 ||||| ||| |||||||| ||||| | ||| || || | |||| |||| Sbjct 5636 AGTGCATAATAGCTCACTGATCGAGCGCGCTTGCGCCGAAGATGAACGGG-GCTAAGCGA 5578 Query 516 TCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558 ||| ||||||| ||||||| | | ||| |||||||| ||||| Sbjct 5577 TCTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGAGGAGC 5535 >seq13492 Length=22571 Score = 89.7 bits (98), Expect = 2e-15 Identities = 126/175 (72%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | | ||||| || | ||||| | ||| | Sbjct 3413 AGTGAGACAATGGGGGATAAGCTTCATCGTCAAGAGGGAAACAGCCCGGATCACCAGAAA 3472 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| ||||||| ||| ||| | | || || || | ||| ||||||| |||| Sbjct 3473 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAG 3530 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||| || | |||||||||| | || ||||||||||||| |||||||| ||||| Sbjct 3531 GTTTGCCTAGAAGCAGCCACCC-TTGAAAGAGTGCGTAATAGCTCACTGATCGAG 3584 >seq5914 Length=11454 Score = 78.8 bits (86), Expect = 3e-12 Identities = 99/136 (73%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 14 GGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG 73 |||| | ||| ||| | | |||||||| |||||||| | ||| | |||||||| Sbjct 908 GGGCAATTGTCACTGCTTATGGACCCGAACTTGGGTGATCTATCTATGACTAGGATGAAC 967 Query 74 GTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCT 133 | ||| | || ||||||||| ||| ||| |||||||| ||| || |||||| | Sbjct 968 CTTAGGTGAAACTAAGTGGAGGTCCAAACTGACTGATGTTGAAGAATCAGCAGATGAGTT 1027 Query 134 GTGGGTAGGGGTGAAA 149 |||| ||||||||||| Sbjct 1028 GTGGTTAGGGGTGAAA 1043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1688919969792