Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq22748 181 4e-43
seq1391 104 8e-20
seq13492 89.7 2e-15
seq5914 78.8 3e-12
>seq22748
Length=18834
Score = 181 bits (200), Expect = 4e-43
Identities = 388/571 (68%), Gaps = 38/571 (7%)
Strand=Plus/Minus
Query 14 GGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG 73
|||| | ||| ||| | | |||||||| | |||||||| ||||| |||||||||||
Sbjct 14432 GGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAG 14373
Query 74 GTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCT 133
| ||| | || |||||||||||||| ||| |||||||| ||| || ||||||| |
Sbjct 14372 CTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTT 14313
Query 134 GTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATT 193
|||| ||||||||||| || | | ||| || |||||||||||| |||||| ||
Sbjct 14312 GTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTT 14253
Query 194 TAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTTATGGCTAGGG-G 247
||| || ||| | || |||| |||||| ||||||||| || |||
Sbjct 14252 GAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCC 14198
Query 248 GTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------GCATCAGTTTTAC 299
| | ||| ||||||| | |||||||| |||| | ||| | ||
Sbjct 14197 GCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGATCTCAAAATAAC 14140
Query 300 CGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGA 348
| || |||||| ||||| | |||| | | | ||||||| || |
Sbjct 14139 AGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACA 14080
Query 349 ATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATT 408
||||| | ||||||||||||| ||||||| ||| ||| | | || || || | |
Sbjct 14079 GCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGT 14022
Query 409 GCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGC 468
|| ||||||| |||| ||| || | |||||||||| | || ||||||||||||| |||
Sbjct 14021 GCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGC 13963
Query 469 TCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAG 528
||||| ||||| || ||| || || | |||| |||| ||| ||||||| |
Sbjct 13962 TCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTG 13904
Query 529 TGGGATCATTTATATG-ATCGGTAGGGGAGC 558
|||||| | | ||| ||||||||||||||
Sbjct 13903 TGGGAT-GTAAAAATGCATCGGTAGGGGAGC 13874
Score = 181 bits (200), Expect = 4e-43
Identities = 388/571 (68%), Gaps = 38/571 (7%)
Strand=Plus/Minus
Query 14 GGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG 73
|||| | ||| ||| | | |||||||| | |||||||| ||||| |||||||||||
Sbjct 16897 GGGCAATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAG 16838
Query 74 GTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCT 133
| ||| | || |||||||||||||| ||| |||||||| ||| || ||||||| |
Sbjct 16837 CTTGGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTT 16778
Query 134 GTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATT 193
|||| ||||||||||| || | | ||| || |||||||||||| |||||| ||
Sbjct 16777 GTGGTTAGGGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTT 16718
Query 194 TAGGTAGTGCCTCAAGTATCAC----CATC-GGGGGTAGAGCACTGTTATGGCTAGGG-G 247
||| || ||| | || |||| |||||| ||||||||| || |||
Sbjct 16717 GAGGCGCAGC----AGT-TGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCC 16663
Query 248 GTCATTGCGACTTACCAAACCATTGCAAACTCCGAATGC--------GCATCAGTTTTAC 299
| | ||| ||||||| | |||||||| |||| | ||| | ||
Sbjct 16662 GCGAGAGCG--GTACCAAATCGAGGCAAACTCTGAATACTAGATATGATCTCAAAATAAC 16605
Query 300 CGCGG-----------GAGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGA 348
| || |||||| ||||| | |||| | | | ||||||| || |
Sbjct 16604 AGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACA 16545
Query 349 ATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATT 408
||||| | ||||||||||||| ||||||| ||| ||| | | || || || | |
Sbjct 16544 GCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGT 16487
Query 409 GCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGC 468
|| ||||||| |||| ||| || | |||||||||| | || ||||||||||||| |||
Sbjct 16486 GCAGAGACAGCCAGGAGGTTTGCCTAGAAGCAGCCA-CCCTTGAAAGAGTGCGTAATAGC 16428
Query 469 TCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAG 528
||||| ||||| || ||| || || | |||| |||| ||| ||||||| |
Sbjct 16427 TCACTGATCGAGCGCTCTTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTG 16369
Query 529 TGGGATCATTTATATG-ATCGGTAGGGGAGC 558
|||||| | | ||| ||||||||||||||
Sbjct 16368 TGGGAT-GTAAAAATGCATCGGTAGGGGAGC 16339
>seq1391
Length=23006
Score = 104 bits (114), Expect = 8e-20
Identities = 161/224 (72%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 336 CGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCTAAGTTAAACTA 395
||||||| || || ||||| | ||| ||||||||| ||||||| || ||| | | |
Sbjct 5753 CGAGAGGGAAACAACCCGGATCACCAGTTAAGGCCCCTAAATGACCACTTAGTGATA--A 5696
Query 396 ACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCATTCATTTAAAG 455
| || || | ||| |||||||||||| ||| || | |||||||||| | || ||||
Sbjct 5695 AGGAGGTAGGGGTGCAGAGACAGCTAGGAGGTTCGCCTAGAAGCAGCCA-CCCTTGAAAG 5637
Query 456 AGTGCGTAACAGCTCACTAGTCGAGGAGTCGGGCGTGGATAATAATCGGGTATTAAGTTG 515
||||| ||| |||||||| ||||| | ||| || || | |||| ||||
Sbjct 5636 AGTGCATAATAGCTCACTGATCGAGCGCGCTTGCGCCGAAGATGAACGGG-GCTAAGCGA 5578
Query 516 TCTACCGAAGCAGTGGGATCATTTATATG-ATCGGTAGGGGAGC 558
||| ||||||| ||||||| | | ||| |||||||| |||||
Sbjct 5577 TCTGCCGAAGCTGTGGGAT-GTAAAAATGCATCGGTAGAGGAGC 5535
>seq13492
Length=22571
Score = 89.7 bits (98), Expect = 2e-15
Identities = 126/175 (72%), Gaps = 3/175 (2%)
Strand=Plus/Plus
Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365
|||||| ||||| | |||| | | | | ||||| || | ||||| | ||| |
Sbjct 3413 AGTGAGACAATGGGGGATAAGCTTCATCGTCAAGAGGGAAACAGCCCGGATCACCAGAAA 3472
Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425
||||||| ||||||| ||| ||| | | || || || | ||| ||||||| ||||
Sbjct 3473 AGGCCCCTAAATGACCGCTCAGTGATA--AAGGAGGTAGGGGTGCAGAGACAGCCAGGAG 3530
Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480
||| || | |||||||||| | || ||||||||||||| |||||||| |||||
Sbjct 3531 GTTTGCCTAGAAGCAGCCACCC-TTGAAAGAGTGCGTAATAGCTCACTGATCGAG 3584
>seq5914
Length=11454
Score = 78.8 bits (86), Expect = 3e-12
Identities = 99/136 (73%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 14 GGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG 73
|||| | ||| ||| | | |||||||| |||||||| | ||| | ||||||||
Sbjct 908 GGGCAATTGTCACTGCTTATGGACCCGAACTTGGGTGATCTATCTATGACTAGGATGAAC 967
Query 74 GTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCT 133
| ||| | || ||||||||| ||| ||| |||||||| ||| || |||||| |
Sbjct 968 CTTAGGTGAAACTAAGTGGAGGTCCAAACTGACTGATGTTGAAGAATCAGCAGATGAGTT 1027
Query 134 GTGGGTAGGGGTGAAA 149
|||| |||||||||||
Sbjct 1028 GTGGTTAGGGGTGAAA 1043
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1688919969792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |