Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq25396 129 1e-27
seq22748 129 1e-27
seq8783 129 1e-27
seq9254 89.7 9e-16
seq1391 84.2 4e-14
seq5913 80.6 5e-13
seq5911 73.4 7e-11
>seq25396
Length=25890
Score = 129 bits (142), Expect = 1e-27
Identities = 177/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 24928 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 24869
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| |||
Sbjct 24868 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 24816
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 24815 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 24759
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 24758 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 24699
Query 249 CCT 251
|||
Sbjct 24698 CCT 24696
>seq22748
Length=18834
Score = 129 bits (142), Expect = 1e-27
Identities = 177/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 15069 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 15010
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| |||
Sbjct 15009 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 14957
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 14956 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 14900
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 14899 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 14840
Query 249 CCT 251
|||
Sbjct 14839 CCT 14837
Score = 123 bits (136), Expect = 5e-26
Identities = 176/243 (72%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 17534 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 17475
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| |||
Sbjct 17474 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 17422
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | | || || ||| ||||||||||||||||| |||
Sbjct 17421 C--TGC-TGCTGAATCCATGGGCAGGAAAGAGACAACCTGGCGAACTGAAACATCTTAGT 17365
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 17364 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 17305
Query 249 CCT 251
|||
Sbjct 17304 CCT 17302
>seq8783
Length=11423
Score = 129 bits (142), Expect = 1e-27
Identities = 177/243 (73%), Gaps = 11/243 (5%)
Strand=Plus/Minus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
||||||| ||| ||| | || ||| ||||| ||||||| ||| | ||| ||||
Sbjct 6468 GGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGTAAGCGACGAAATGCTTCGGG 6409
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||| | | | |||||| ||||| |||||| || |||| |||
Sbjct 6408 GAGTT-GAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACC------TTTCAAA 6356
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| ||| |||||||| ||| || | |||| || ||| ||||||||||||||||| |||
Sbjct 6355 C--TGC-TGCTGAATCCATGGGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGT 6299
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
||| ||||||||||| ||| | ||||||| ||||| |||||||||||||||| ||
Sbjct 6298 AGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAG 6239
Query 249 CCT 251
|||
Sbjct 6238 CCT 6236
>seq9254
Length=9297
Score = 89.7 bits (98), Expect = 9e-16
Identities = 86/109 (79%), Gaps = 1/109 (1%)
Strand=Plus/Minus
Query 137 TGCTGAATACATAGGTATGCAAA-GCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195
|| ||||| ||| | | ||||| | ||| |||||||||||||||| | ||||| |
Sbjct 2215 TGTTGAATCCATGAGCAGGCAAATGACAACCTAGCGAACTGAAACATCTTAATAGCTAGA 2156
Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244
|||||||||| ||| | ||||||| ||||| ||||||||||||||||
Sbjct 2155 GGAAAAGAAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGA 2107
>seq1391
Length=23006
Score = 84.2 bits (92), Expect = 4e-14
Identities = 153/218 (70%), Gaps = 12/218 (6%)
Strand=Plus/Minus
Query 35 GATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCG 94
|| ||||| |||||| ||| | ||| |||||||| | ||| | | | ||||||
Sbjct 6702 GAAGAAGGGTGTAGTAAGCGACGAAATGCTTCGGGGAGTT-GAAAATAAGCGTAGATCCG 6644
Query 95 CAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGTCATTGCATGCTGAATACATAGGTAT 154
|||| |||||| || ||||| ||| | ||| |||| ||| ||| || |
Sbjct 6643 GAGATC-CCGAATAGGTAAACC------TTTCAAAC--TGC-TGCTAAATCCATGGGCAG 6594
Query 155 GCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGA 213
|||| || ||| ||||||||||||||||| | ||||| ||||||||||| ||| |
Sbjct 6593 GCAAGAGACAACTTGGCGAACTGAAACATCTTACTAGCTAGAGGAAAAGAAAGCAAAAGC 6534
Query 214 GATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAGCCT 251
||| ||| |||| ||||| |||||||| |||||
Sbjct 6533 AATTTCCATTGTAGCAACGAGCAAAATGGGAGCAGCCT 6496
>seq5913
Length=4307
Score = 80.6 bits (88), Expect = 5e-13
Identities = 84/109 (77%), Gaps = 1/109 (1%)
Strand=Plus/Plus
Query 137 TGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCA 195
|||| ||| ||| || | ||| || ||| |||||||||||||||| |||| || |
Sbjct 2637 TGCTAAATCCATGGGCAGACAAGAGGCAACCTAGCGAACTGAAACATCTTAGTATCTAGA 2696
Query 196 GGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGA 244
|||||||||| ||| | |||||| ||||| |||||||||||||||
Sbjct 2697 GGAAAAGAAAGCAAAAGTGATTCCTGTAGTAGCAGCGAGCGAAATGGGA 2745
>seq5911
Length=1766
Score = 73.4 bits (80), Expect = 7e-11
Identities = 61/75 (81%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 177 AAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCG 236
|||||||| ||||||| | ||||||||| ||| | |||||| ||||||||||||||
Sbjct 648 AAACATCTTAGTAGCTAGAAGAAAAGAAAGCAAAAGCGATTCCTGTAGTAGTGGCGAGCG 707
Query 237 AAATGGGATGAGCCT 251
||||| || |||||
Sbjct 708 AAATGCGAGCAGCCT 722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918030362368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |