Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq22748 174 5e-41
seq38098 136 1e-29
seq1391 136 1e-29
seq12662 118 4e-24
seq3574 104 8e-20
seq17463 93.3 1e-16
seq3602 77.0 1e-11
>seq22748
Length=18834
Score = 174 bits (192), Expect = 5e-41
Identities = 388/570 (68%), Gaps = 23/570 (4%)
Strand=Plus/Plus
Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60
||||| || |||| |||||||||||||||| ||| || ||||| | || ||
Sbjct 12707 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 12766
Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120
| | | |||| |||||||| |||||||||||| |||||||||| | || ||||||
Sbjct 12767 GTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 12825
Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177
||||| | ||| | |||||||| || || || || |||||||||| ||
Sbjct 12826 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 12885
Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234
| | ||||||||||| ||| | | ||| | | || || | |||| |
Sbjct 12886 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGG-GGCCT--T 12942
Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292
| | | || ||||||| || | || || || | || |||||| ||| | | ||||
Sbjct 12943 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTG 13000
Query 293 AAGGTCCCGGGG-TCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351
||||| || ||||| |||| || | | | ||||||| || | | |
Sbjct 13001 AAGGTTAATAGGATCTTTCTGTCCAAGTGCAGGTAGCCCGCATCTTCACAGACATGTCTA 13060
Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410
|||||||| |||| | ||||||| | || |||||||||| ||||| | ||||||
Sbjct 13061 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTACGGGTCGG 13119
Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470
|||||||| ||||||||||||||||| ||||||| ||||||||||| |||||||| ||
Sbjct 13120 AACTTACCTGACAAGGAATTTCGCTAACTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 13179
Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530
|||||||| | ||| ||| || || | | |||| | ||| |||||
Sbjct 13180 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 13233
Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560
|| |||| ||||||||||||| || ||||
Sbjct 13234 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 13263
>seq38098
Length=37492
Score = 136 bits (150), Expect = 1e-29
Identities = 179/246 (73%), Gaps = 3/246 (1%)
Strand=Plus/Plus
Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299
||||||||||||||||||| | | || || | |||||||||| ||||| |
Sbjct 2726 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGTGAAGCTATAGTTAAGGTGCA 2785
Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359
||||||||| || || |||| | | ||||||| | | | ||||||||| |
Sbjct 2786 CGGGGTCTTATCATCTAGCCGTTGGTACTCCGCATCTTCATAGAGAATTCAATTTCACTG 2845
Query 360 --GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417
|| | || || |||| ||| ||||||||| |||||| ||||||||| |||||
Sbjct 2846 AGGGTCCATGTCGGAAACAGTGGGGCAGTCGTTACACCATTCATGCAGGTCGCTACTTAT 2905
Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477
|||||| ||||||||||||||||||| |||| |||||| | ||||||||| |||||
Sbjct 2906 GCGACAAAGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCTGCCGTTTACCAGGGCT 2965
Query 478 TCAATT 483
|| |||
Sbjct 2966 TCCATT 2971
>seq1391
Length=23006
Score = 136 bits (150), Expect = 1e-29
Identities = 153/201 (76%), Gaps = 8/201 (4%)
Strand=Plus/Plus
Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409
|||||||| |||| | ||||||||| | || | |||||||| ||||||| ||||
Sbjct 4723 ATTTCACCAAGCCTCTCTTTGAGACAGT-GCCCAGATTGTTACGCCTTTCGTGCGGGTCA 4781
Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469
|||||||||||||||||||||||||||||||||| ||||||||||| |||| || |
Sbjct 4782 AAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACAGTCGCCTTTCA 4841
Query 470 CTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCT 529
||| |||||| | | ||| ||| | | || | | |||| | ||||||||
Sbjct 4842 CTGAGGCTTCCGTCA-CCGGCTCCCCTATCA-----TCAGGTCACCAACTTCCTTAACCT 4895
Query 530 TCCAGCACCGGGCAGGCGTCA 550
|||||||| ||||||||||||
Sbjct 4896 TCCAGCACTGGGCAGGCGTCA 4916
>seq12662
Length=54041
Score = 118 bits (130), Expect = 4e-24
Identities = 107/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 349 CAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTC 408
|| ||||||| || | || |||||||| || ||| ||||| |||||||||||||||
Sbjct 43688 CATTTTCACCCGGTCCATGTCGGAGACAGCGAGGCAGTTGTTACACCATTCGTGCAGGTC 43629
Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468
| ||||| |||||||||||||||||| ||||| |||| |||||| |||||||||
Sbjct 43628 GCTACTTATGTGACAAGGAATTTCGCTACTGTAGGACAGTTAGAGTTACTGCCGCCGTTT 43569
Query 469 ACTGGGGCTTCAATT 483
|| ||||||| |||
Sbjct 43568 ACCAGGGCTTCCATT 43554
>seq3574
Length=40537
Score = 104 bits (114), Expect = 8e-20
Identities = 74/85 (87%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
|||||||||| ||||||| ||| ||||||||||| |||||||||||||||| ||||| |
Sbjct 36832 TCGTTACGCCTTTCGTGCGGGTTGGAACTTACCCAACAAGGAATTTCGCTATCTTAGAAC 36891
Query 446 GGTTATAGTTACCACCGCCGTTTAC 470
||||||||||| |||||| || ||
Sbjct 36892 CGTTATAGTTACGACCGCCATTCAC 36916
>seq17463
Length=17885
Score = 93.3 bits (102), Expect = 1e-16
Identities = 77/94 (82%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445
||||||| | ||| ||| |||| |||||||||||||||||||||| |||||||||||
Sbjct 5946 TCGTTACACGTTTCATGCGGGTCAAAACTTACCCGACAAGGAATTTCACTACCTTAGGAC 6005
Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479
|||||||||| || ||| || | || ||||||
Sbjct 6006 CATTATAGTTACAACTGCCATTCATTGAGGCTTC 6039
>seq3602
Length=31274
Score = 77.0 bits (84), Expect = 1e-11
Identities = 62/75 (83%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 397 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTA 456
|| ||||| || ||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 20294 TTTGTGCAAGTTGGAACTTACCCGACAAGCAATTTCGCTACCTTAGGACCATTCTAGTTA 20235
Query 457 CCACCGCCGTTTACT 471
| ||| ||| |||
Sbjct 20234 CGGTCGCTGTTCACT 20220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1701714818048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |