Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq22748 174 5e-41 seq38098 136 1e-29 seq1391 136 1e-29 seq12662 118 4e-24 seq3574 104 8e-20 seq17463 93.3 1e-16 seq3602 77.0 1e-11 >seq22748 Length=18834 Score = 174 bits (192), Expect = 5e-41 Identities = 388/570 (68%), Gaps = 23/570 (4%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 12707 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 12766 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | | | |||| |||||||| |||||||||||| |||||||||| | || |||||| Sbjct 12767 GTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTAC-GCCCCAT 12825 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCC---AGATCATGGGCCAAGGTTAGATATC 177 ||||| | ||| | |||||||| || || || || |||||||||| || Sbjct 12826 AGAAACTGTCTACCTGAGACTGTCCCTTGGCCCGTAGGTCCTGACACAAGGTTAGAATTC 12885 Query 178 CACTACGGTCAGAGTGGTATTTCAACAACGACTC---CACAACCACTAGCGTGGCCGCAT 234 | | ||||||||||| ||| | | ||| | | || || | |||| | Sbjct 12886 TAGCTCTTCCAGAGTGGTATCTCACTGATGGCTCGGGCCCCCCCGGAAGGG-GGCCT--T 12942 Query 235 CATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTG 292 | | | || ||||||| || | || || || | || |||||| ||| | | |||| Sbjct 12943 CTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCC--AAAGCCAATCCCAGGGAACAGTG 13000 Query 293 AAGGTCCCGGGG-TCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAA 351 ||||| || ||||| |||| || | | | ||||||| || | | | Sbjct 13001 AAGGTTAATAGGATCTTTCTGTCCAAGTGCAGGTAGCCCGCATCTTCACAGACATGTCTA 13060 Query 352 TTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGG 410 |||||||| |||| | ||||||| | || |||||||||| ||||| | |||||| Sbjct 13061 TTTCACCGAGCCTCTCTCCGAGACAGT-GCCCAGATCGTTACGCCTTTCGTACGGGTCGG 13119 Query 411 AACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTAC 470 |||||||| ||||||||||||||||| ||||||| ||||||||||| |||||||| || Sbjct 13120 AACTTACCTGACAAGGAATTTCGCTAACTTAGGACCGTTATAGTTACGGCCGCCGTTCAC 13179 Query 471 TGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTT 530 |||||||| | ||| ||| || || | | |||| | ||| ||||| Sbjct 13180 CGGGGCTTC-GGTCGCCGGCTC-----CCCTGTCATCAGGTCACCAACTTCCTTGACCTT 13233 Query 531 CCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 || |||| ||||||||||||| || |||| Sbjct 13234 CCGGCACTGGGCAGGCGTCAGCCCCCATAC 13263 >seq38098 Length=37492 Score = 136 bits (150), Expect = 1e-29 Identities = 179/246 (73%), Gaps = 3/246 (1%) Strand=Plus/Plus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | | || || | |||||||||| ||||| | Sbjct 2726 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGTGAAGCTATAGTTAAGGTGCA 2785 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| || || |||| | | ||||||| | | | ||||||||| | Sbjct 2786 CGGGGTCTTATCATCTAGCCGTTGGTACTCCGCATCTTCATAGAGAATTCAATTTCACTG 2845 Query 360 --GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 || | || || |||| ||| ||||||||| |||||| ||||||||| ||||| Sbjct 2846 AGGGTCCATGTCGGAAACAGTGGGGCAGTCGTTACACCATTCATGCAGGTCGCTACTTAT 2905 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 |||||| ||||||||||||||||||| |||| |||||| | ||||||||| ||||| Sbjct 2906 GCGACAAAGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCTGCCGTTTACCAGGGCT 2965 Query 478 TCAATT 483 || ||| Sbjct 2966 TCCATT 2971 >seq1391 Length=23006 Score = 136 bits (150), Expect = 1e-29 Identities = 153/201 (76%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 351 ATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCG 409 |||||||| |||| | ||||||||| | || | |||||||| ||||||| |||| Sbjct 4723 ATTTCACCAAGCCTCTCTTTGAGACAGT-GCCCAGATTGTTACGCCTTTCGTGCGGGTCA 4781 Query 410 GAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 |||||||||||||||||||||||||||||||||| ||||||||||| |||| || | Sbjct 4782 AAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACAGTCGCCTTTCA 4841 Query 470 CTGGGGCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCT 529 ||| |||||| | | ||| ||| | | || | | |||| | |||||||| Sbjct 4842 CTGAGGCTTCCGTCA-CCGGCTCCCCTATCA-----TCAGGTCACCAACTTCCTTAACCT 4895 Query 530 TCCAGCACCGGGCAGGCGTCA 550 |||||||| |||||||||||| Sbjct 4896 TCCAGCACTGGGCAGGCGTCA 4916 >seq12662 Length=54041 Score = 118 bits (130), Expect = 4e-24 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 349 CAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTC 408 || ||||||| || | || |||||||| || ||| ||||| ||||||||||||||| Sbjct 43688 CATTTTCACCCGGTCCATGTCGGAGACAGCGAGGCAGTTGTTACACCATTCGTGCAGGTC 43629 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 | ||||| |||||||||||||||||| ||||| |||| |||||| ||||||||| Sbjct 43628 GCTACTTATGTGACAAGGAATTTCGCTACTGTAGGACAGTTAGAGTTACTGCCGCCGTTT 43569 Query 469 ACTGGGGCTTCAATT 483 || ||||||| ||| Sbjct 43568 ACCAGGGCTTCCATT 43554 >seq3574 Length=40537 Score = 104 bits (114), Expect = 8e-20 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| ||| ||||||||||| |||||||||||||||| ||||| | Sbjct 36832 TCGTTACGCCTTTCGTGCGGGTTGGAACTTACCCAACAAGGAATTTCGCTATCTTAGAAC 36891 Query 446 GGTTATAGTTACCACCGCCGTTTAC 470 ||||||||||| |||||| || || Sbjct 36892 CGTTATAGTTACGACCGCCATTCAC 36916 >seq17463 Length=17885 Score = 93.3 bits (102), Expect = 1e-16 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 ||||||| | ||| ||| |||| |||||||||||||||||||||| ||||||||||| Sbjct 5946 TCGTTACACGTTTCATGCGGGTCAAAACTTACCCGACAAGGAATTTCACTACCTTAGGAC 6005 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||||||| || ||| || | || |||||| Sbjct 6006 CATTATAGTTACAACTGCCATTCATTGAGGCTTC 6039 >seq3602 Length=31274 Score = 77.0 bits (84), Expect = 1e-11 Identities = 62/75 (83%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 397 TTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTA 456 || ||||| || ||||||||||||||||| |||||||||||||||||| || |||||| Sbjct 20294 TTTGTGCAAGTTGGAACTTACCCGACAAGCAATTTCGCTACCTTAGGACCATTCTAGTTA 20235 Query 457 CCACCGCCGTTTACT 471 | ||| ||| ||| Sbjct 20234 CGGTCGCTGTTCACT 20220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701714818048