Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq15005 111 3e-22 seq1481 111 3e-22 seq29079 102 2e-19 seq29539 78.8 2e-12 >seq15005 Length=3975 Score = 111 bits (122), Expect = 3e-22 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164 ||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| || Sbjct 841 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 900 Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||| ||||| ||||| || |||||||||||| ||| ||||| || | ||| Sbjct 901 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 960 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284 ||| | ||| |||| | |||| ||| ||| ||||| || || ||||||| || Sbjct 961 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACGACCTAATACTAC 1020 Query 285 GCATCCCCATCGTACACCG 303 ||| | |||| ||| || Sbjct 1021 GCAGGCTCATCAAACAGCG 1039 >seq1481 Length=19650 Score = 111 bits (122), Expect = 3e-22 Identities = 115/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Minus Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140 |||||||||| || | || ||| ||||| |||||||||| | | ||| |||| | Sbjct 3592 AAAAGAAGTTCACGACCC-TAGG-CCTTCTACCTTCACGCTGCATTGCTTCGTCAGGCCT 3535 Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200 ||| ||||| || || || |||||||||||||||||||||| ||| |||||||| || Sbjct 3534 TCGCTCATTGCAGAAAATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTTAG 3475 Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228 | ||||||||| ||| | ||||||| || Sbjct 3474 TCCCAATGTGGCGGATCATCCTCTCGGA 3447 >seq29079 Length=112050 Score = 102 bits (112), Expect = 2e-19 Identities = 120/161 (75%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 68 TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGG 127 ||| ||| || |||||||||| || | ||||| ||||| ||| ||||| | | | Sbjct 30243 TTTCTTCTCTGGGAAAAGAAGTTCACGAATCGTAGG-CCTTCTACCTCCACGCGGCATTG 30185 Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187 || ||| || ||| |||||| || ||||| |||||||||||||||||||||| | Sbjct 30184 CTCCGTCAAGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTA 30125 Query 188 GACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 | || ||||||||| ||| ||||| || | ||||||| || Sbjct 30124 GGCCATGTCTCAGTCCCAGTGTGGCCGATCATCCTCTCGGA 30084 >seq29539 Length=35504 Score = 78.8 bits (86), Expect = 2e-12 Identities = 100/135 (74%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 68 TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGG 127 ||| ||| | | |||||||||| | | |||||| ||||| ||| ||||| | | Sbjct 3684 TTTCTTCTCCGAGAAAAGAAGTTCATGACCCGTAGG-CCTTCTACCTCCACGCGGCATTA 3742 Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187 || |||| || ||| |||||| || |||| ||||||| ||||| ||| ||||||| Sbjct 3743 CTCCATCAGGCTTTCGCCCATTGCAGAAAATTC-TCACTGCGGCCTCTGGTAAGAGTTTG 3801 Query 188 GACCGTGTCTCAGTT 202 | ||||||||||||| Sbjct 3802 GGCCGTGTCTCAGTT 3816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068369829376