Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq15005 111 3e-22
seq1481 111 3e-22
seq29079 102 2e-19
seq29539 78.8 2e-12
>seq15005
Length=3975
Score = 111 bits (122), Expect = 3e-22
Identities = 144/199 (72%), Gaps = 0/199 (0%)
Strand=Plus/Plus
Query 105 CCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCA 164
||||| || |||||| | | ||||| || | || ||| |||||| |||| ||||| ||
Sbjct 841 CCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCCATTGTCCAAGATTCCCCA 900
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||| ||||| ||||| || |||||||||||| ||| ||||| || | |||
Sbjct 901 CTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCGAA 960
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAAC 284
||| | ||| |||| | |||| ||| ||| ||||| || || ||||||| ||
Sbjct 961 AAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGACCAACGACCTAATACTAC 1020
Query 285 GCATCCCCATCGTACACCG 303
||| | |||| ||| ||
Sbjct 1021 GCAGGCTCATCAAACAGCG 1039
>seq1481
Length=19650
Score = 111 bits (122), Expect = 3e-22
Identities = 115/148 (78%), Gaps = 2/148 (1%)
Strand=Plus/Minus
Query 81 AAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTC 140
|||||||||| || | || ||| ||||| |||||||||| | | ||| |||| |
Sbjct 3592 AAAAGAAGTTCACGACCC-TAGG-CCTTCTACCTTCACGCTGCATTGCTTCGTCAGGCCT 3535
Query 141 TCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAG 200
||| ||||| || || || |||||||||||||||||||||| ||| |||||||| ||
Sbjct 3534 TCGCTCATTGCAGAAAATCCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTTAG 3475
Query 201 TTCCAATGTGGGGGACCTTCCTCTCAGA 228
| ||||||||| ||| | ||||||| ||
Sbjct 3474 TCCCAATGTGGCGGATCATCCTCTCGGA 3447
>seq29079
Length=112050
Score = 102 bits (112), Expect = 2e-19
Identities = 120/161 (75%), Gaps = 1/161 (1%)
Strand=Plus/Minus
Query 68 TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGG 127
||| ||| || |||||||||| || | ||||| ||||| ||| ||||| | | |
Sbjct 30243 TTTCTTCTCTGGGAAAAGAAGTTCACGAATCGTAGG-CCTTCTACCTCCACGCGGCATTG 30185
Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187
|| ||| || ||| |||||| || ||||| |||||||||||||||||||||| |
Sbjct 30184 CTCCGTCAAGCTTTCGCCCATTGTGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTA 30125
Query 188 GACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
| || ||||||||| ||| ||||| || | ||||||| ||
Sbjct 30124 GGCCATGTCTCAGTCCCAGTGTGGCCGATCATCCTCTCGGA 30084
>seq29539
Length=35504
Score = 78.8 bits (86), Expect = 2e-12
Identities = 100/135 (74%), Gaps = 2/135 (1%)
Strand=Plus/Plus
Query 68 TTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGG 127
||| ||| | | |||||||||| | | |||||| ||||| ||| ||||| | |
Sbjct 3684 TTTCTTCTCCGAGAAAAGAAGTTCATGACCCGTAGG-CCTTCTACCTCCACGCGGCATTA 3742
Query 128 CTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTG 187
|| |||| || ||| |||||| || |||| ||||||| ||||| ||| |||||||
Sbjct 3743 CTCCATCAGGCTTTCGCCCATTGCAGAAAATTC-TCACTGCGGCCTCTGGTAAGAGTTTG 3801
Query 188 GACCGTGTCTCAGTT 202
| |||||||||||||
Sbjct 3802 GGCCGTGTCTCAGTT 3816
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068369829376
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |