Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq9766 107 3e-21 seq5631 107 3e-21 seq21710 98.7 2e-18 seq9767 89.7 8e-16 >seq9766 Length=43015 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 42227 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 42284 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 42285 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 42344 Query 121 GAA 123 ||| Sbjct 42345 GAA 42347 >seq5631 Length=4661 Score = 107 bits (118), Expect = 3e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | ||| || ||| || |||| Sbjct 3873 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 3930 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||| | ||||||||||| |||||||||||||||||||||||| || | Sbjct 3931 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 3990 Query 121 GAA 123 ||| Sbjct 3991 GAA 3993 >seq21710 Length=7620 Score = 98.7 bits (108), Expect = 2e-18 Identities = 97/123 (79%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||||| || ||| | | ||||||| | || || ||| || |||| Sbjct 7262 GTACGAGAGGAACCGTTGA-TTC-GTACAATTGGTCATCGCCCTTGGTTGAAAAGCCAGT 7205 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||| ||||||||||| |||||| ||||||||||||||| | || | Sbjct 7204 GGCGCGAAGCTACCATGCGCTGGATTATGACTGAACACCTCTAAGTCAGAATTCGGGCTA 7145 Query 121 GAA 123 ||| Sbjct 7144 GAA 7142 >seq9767 Length=3674 Score = 89.7 bits (98), Expect = 8e-16 Identities = 98/124 (79%), Gaps = 6/124 (5%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCT-GACCAGGCAG 59 ||||||||||||||| || ||| | | ||| ||| | ||| ||| | || || ||| Sbjct 1933 GTACGAGAGGAACCGTTGA-TTC-GCACAATGGGTCATCGCG-CTGGGTAGAAAAGCCAG 1989 Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 || |||||| |||||| || ||||||||| |||||| |||||||||||||||||| || Sbjct 1990 TGGCGCGAA--TACCATGTGTTGGATTATGACTGAACACCTCTAAGTCAGAATCCAGGCT 2047 Query 120 AGAA 123 |||| Sbjct 2048 AGAA 2051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818880591872