Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq9766 107 3e-21
seq5631 107 3e-21
seq21710 98.7 2e-18
seq9767 89.7 8e-16
>seq9766
Length=43015
Score = 107 bits (118), Expect = 3e-21
Identities = 99/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 42227 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 42284
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 42285 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 42344
Query 121 GAA 123
|||
Sbjct 42345 GAA 42347
>seq5631
Length=4661
Score = 107 bits (118), Expect = 3e-21
Identities = 99/123 (80%), Gaps = 2/123 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | ||| || ||| || ||||
Sbjct 3873 GTACGAGAGGAACCGTTGA-TTC-GCACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGT 3930
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||| | ||||||||||| |||||||||||||||||||||||| || |
Sbjct 3931 GGCGCGAAGCTACCGTGCGCTGGATTATGACTGAACGCCTCTAAGTCAGAATCCGGGCTA 3990
Query 121 GAA 123
|||
Sbjct 3991 GAA 3993
>seq21710
Length=7620
Score = 98.7 bits (108), Expect = 2e-18
Identities = 97/123 (79%), Gaps = 2/123 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||||| || ||| | | ||||||| | || || ||| || ||||
Sbjct 7262 GTACGAGAGGAACCGTTGA-TTC-GTACAATTGGTCATCGCCCTTGGTTGAAAAGCCAGT 7205
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||||| ||||||||||| |||||| ||||||||||||||| | || |
Sbjct 7204 GGCGCGAAGCTACCATGCGCTGGATTATGACTGAACACCTCTAAGTCAGAATTCGGGCTA 7145
Query 121 GAA 123
|||
Sbjct 7144 GAA 7142
>seq9767
Length=3674
Score = 89.7 bits (98), Expect = 8e-16
Identities = 98/124 (79%), Gaps = 6/124 (5%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCT-GACCAGGCAG 59
||||||||||||||| || ||| | | ||| ||| | ||| ||| | || || |||
Sbjct 1933 GTACGAGAGGAACCGTTGA-TTC-GCACAATGGGTCATCGCG-CTGGGTAGAAAAGCCAG 1989
Query 60 TGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119
|| |||||| |||||| || ||||||||| |||||| |||||||||||||||||| ||
Sbjct 1990 TGGCGCGAA--TACCATGTGTTGGATTATGACTGAACACCTCTAAGTCAGAATCCAGGCT 2047
Query 120 AGAA 123
||||
Sbjct 2048 AGAA 2051
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 818880591872
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |