Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq9766 560 3e-157 seq24041 540 3e-151 seq21713 365 1e-98 seq33283 260 4e-67 seq21714 233 6e-59 seq24461 113 1e-22 seq33654 109 2e-21 seq680 93.3 1e-16 >seq9766 Length=43015 Score = 560 bits (620), Expect = 3e-157 Identities = 438/513 (85%), Gaps = 14/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || |||||| |||| |||||||||||||||||| Sbjct 37294 GTACTCATTCCAATTACCAGACTCGAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 37236 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37235 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 37176 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||| Sbjct 37175 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTA 37116 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||| ||||| | || ||||| Sbjct 37115 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTT-AATGATGCGTCACCGGCA 37057 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGC--CCCGAAGGG---- 293 | | || ||||||| || |||||| |||||||| || || | | | || | Sbjct 37056 CGATAACCGTGCGATTTGTCGAGTTATCATGAATCATCA--GAACAACGGGCAGAGCCCT 36999 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATT 352 ||| | ||||||||||||||| || ||||||| ||||||||||||| | ||||||||| Sbjct 36998 CGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTCGGGGTTTGTTGCATGTATT 36939 Query 353 AGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGA 412 |||||||||||||| |||||||||| |||| || ||| |||||| |||| |||| ||| Sbjct 36938 AGCTCTAGAATTACTACGGTTATCCGAGTAG-CAGATACCATCAAACAAACTATAATTGA 36880 Query 413 TTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATGCATGGCT 471 |||||||||||||| | |||||||| || | ||| | | ||||||| |||||||| ||| Sbjct 36879 TTTAATGAGCCATTTGTAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATAGCT 36820 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||| Sbjct 36819 TAATCTTTGAGACAAGCATATGACTACTGGCAG 36787 >seq24041 Length=6280 Score = 540 bits (598), Expect = 3e-151 Identities = 404/466 (87%), Gaps = 12/466 (3%) Strand=Plus/Minus Query 43 TATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCC 102 ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| Sbjct 463 TATTTATTGTCACTACCTCCCCGTGTCAGGATTGGGTAATTTGCGCACCTGCTGCCTTCC 404 Query 103 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTA 162 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | Sbjct 403 TTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCA 344 Query 163 CCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 222 ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 343 CCCGTCACCACCATAGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTG 284 Query 223 AATGAACCATCGCCGGCTC-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGG 281 ||||| | |||||||| | | |||| |||||| ||| |||||| |||||||| | | Sbjct 283 AATGATGCGTCGCCGGCACGATGGCCGTGCGATCCGTCGAGTTATCATGAATCA--TAAG 226 Query 282 AGC--CCCGAAG----GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCG 334 ||| | | || |||| | ||||||||||||||| || ||||||| ||||| | Sbjct 225 AGCAACGGGCAGAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTTG 166 Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394 |||||| | ||| ||||||||||||||||||| |||||||||| |||| || ||| || Sbjct 165 GGGTTTGTTGCACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAG-CAGATACCAT 107 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTAT 453 |||| |||| ||||||||||||||||||||||||||||||||| || | ||| | | || Sbjct 106 CAAACAAACTATAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCTGAATTAGTTCAT 47 Query 454 ACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 499 ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 46 ACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACT 1 >seq21713 Length=4003 Score = 365 bits (404), Expect = 1e-98 Identities = 247/274 (90%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || |||||| |||| |||||||||||||||||| Sbjct 2835 GTACTCATTCCAATTACCAGACTCGAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 2893 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2894 CCCCGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 2953 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||| ||| Sbjct 2954 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTA 3013 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 3014 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCGGCA 3073 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAAT 273 | | |||| |||||| ||| |||||| |||||| Sbjct 3074 CGATGGCCGTGCGATCCGTCGAGTTATCATGAAT 3107 >seq33283 Length=3281 Score = 260 bits (288), Expect = 4e-67 Identities = 229/280 (82%), Gaps = 8/280 (3%) Strand=Plus/Plus Query 232 TCGCCGGCTCAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAA 290 |||||||| | | |||| ||| || |||| |||||| |||||||| ||| | | | | Sbjct 43 TCGCCGGCACGATGGCCGTGCAATCCGTTGAGTTATCATGAATCATCAAAGCAACGGGCA 102 Query 291 GGGC----GTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGC 345 | || || | ||||||||||||||| || ||||||| ||||| ||||||| | || Sbjct 103 GAGCCCGCGTCGACCTTTTATCTAATAAATGCATCCCTTCCAGAAGTTGGGGTTTGTTGC 162 Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 | ||||||||||||||||||| |||||||||| |||| | | ||| |||||| |||| | Sbjct 163 ACGTATTAGCTCTAGAATTACTACGGTTATCCGAGTAGCA-GATACCATCAAACAAACTA 221 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATG 464 |||||||||||||||||||||||||||||||| || ||| || ||||||| ||||| Sbjct 222 TAACTGATTTAATGAGCCATTCGCAGTTTCACAGTCCGAATTAGTTCATACTTACACATG 281 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||| |||||||||||||||||||||||||||||||||||| Sbjct 282 CATAGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 321 >seq21714 Length=1715 Score = 233 bits (258), Expect = 6e-59 Identities = 177/205 (86%), Gaps = 3/205 (1%) Strand=Plus/Plus Query 302 TTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAG 360 ||||||||||||||| || ||||||| ||||| |||||| | || ||||||||||||| Sbjct 1502 TTTTATCTAATAAATGCATCCCTTCCAGAAGTAAGGGTTTGTTACACGTATTAGCTCTAG 1561 Query 361 AATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGA 420 |||||| |||||||| | |||| | | ||| || ||| |||| |||||||||||||||| Sbjct 1562 AATTACTACGGTTATTCGAGTAGCA-GATACCATAAAACAAACTATAACTGATTTAATGA 1620 Query 421 GCCATTCGCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTT 479 ||||||||||||||||| || | ||| || ||||||| |||||||||||||||||||| Sbjct 1621 GCCATTCGCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTT 1680 Query 480 GAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||| Sbjct 1681 GAGACAAGCATATGACTACTGGCAG 1705 >seq24461 Length=40834 Score = 113 bits (124), Expect = 1e-22 Identities = 126/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| | || ||||| || |||| |||||||||||||| || Sbjct 15157 GTACTCATTCCAATTACCAAACTCAAAAA--CCAAGTATTGTCATTTATTGTCACTAACT 15214 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 || | | |||| |||||||| | |||||| |||||||||||||| ||| ||| Sbjct 15215 CCTCTAGA----ATTGAGTAATTTGTGTCCCTGCTACCTTCCTTGGATGTAATAGTTGTT 15270 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGT 167 ||| ||||||| ||||| || | ||| ||||||| | | |||||| Sbjct 15271 TCTTAGGCTCCTTCTCCTCAAGCAAACTCTAATTCTCTGGCACCCGT 15317 >seq33654 Length=52327 Score = 109 bits (120), Expect = 2e-21 Identities = 119/153 (78%), Gaps = 10/153 (7%) Strand=Plus/Minus Query 256 CGTTAAGTTATTATGAATCACCAAGGAGCCCC--GAAGGGC----GTTGGTTTTTTATCT 309 |||| |||||| |||||||| || |||| | | || || || | |||||||| Sbjct 49805 CGTTGAGTTATCATGAATCATCA--GAGCAACTGGCAGAGCCCGCGTCGACCTTTTATCT 49748 Query 310 AATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCA 368 ||||||| || ||||||| ||||| ||||||| | ||| ||||||||||||||||||| | Sbjct 49747 AATAAATGCATCCCTTCCAGAAGTTGGGGTTTGTTGCACGTATTAGCTCTAGAATTACTA 49688 Query 369 CGGTTATCCATGTAGTAAGGTACTATCAAATAA 401 ||||||||| |||| || ||| |||||| || Sbjct 49687 CGGTTATCCGAGTAG-CAGATACCATCAAACAA 49656 >seq680 Length=9511 Score = 93.3 bits (102), Expect = 1e-16 Identities = 73/86 (85%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| | || |||||| |||| |||||||||||||||||| Sbjct 8809 GTACTCATTCCAATTACCAGACTCGAA-GAGCCCGGTATTGTTATTTATTGTCACTACCT 8867 Query 61 CCCCGTGTCGGGATTGGGTAATTTGC 86 | | | || |||||||||||||||| Sbjct 8868 CGTCCTATCAGGATTGGGTAATTTGC 8893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509792094208