Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq29839 221 1e-52 >seq29839 Length=13537 Score = 221 bits (244), Expect = 1e-52 Identities = 566/845 (67%), Gaps = 24/845 (3%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 |||||||| || || ||||| ||||||||||| | ||||| |||||| | || ||||| Sbjct 4312 ATGTACAAGAAAGCCGAAGCCTCCTTCTGGACTGCCGAGGAAGTCGATCTCTCACAAGAC 4371 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | ||||||| ||| | | || |||||||||| | ||||| | || Sbjct 4372 CTTCGCCACTGGGAATCCTTAACTTCTGACGAGAAACATTTCATCACTCATGTCCTTGCC 4431 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTCGCGCAGGAG 61275 ||||| || ||||| || || ||||| |||||| | | ||| ||| | | || Sbjct 4432 TTCTTCGCTGCTTCTGATGGCATCGTTTTGGAGAATCTCGCCGGACGGTTCATGAAAGAA 4491 Query 61276 GTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCAC 61335 || ||||| | || || | |||||| || ||||| |||||||| ||||| |||| Sbjct 4492 GTCCAAGTTGCTGAAGCTAGAGCTTTCTATGGATTCCAAATTGCCATCGAGAACATCCAT 4551 Query 61336 TCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAA- 61392 || |||||||||||| ||||| | || || || |||| | | || ||| ||| Sbjct 4552 TCCGAGATGTACAGTCTTCTCCTTGAAACCTATATCAAAAATTCAAACGAGAA---GAAT 4608 Query 61393 CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTC 61452 || |||||| ||| || || || | || || ||| ||| || |||||||| || Sbjct 4609 CGGTTGTTCCGTGCTATTGAAACTGTCCCCTGTGTCAAGAAGAAGGCTGATTGGGCGTTA 4668 Query 61453 AATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTC 61512 || ||||| || |||| | || | || || | |||| ||||| || Sbjct 4669 AAGTGGAT---TGATAGCACGGAATCGTTCGCCGAGCGTATTTTGGCGTTTGCCTGTGTT 4725 Query 61513 GAGGGTGTATTTTTCAGTGGATCGTTT-GCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 ||||| | || ||| || | |||| | | || || |||||||| |||||||| | Sbjct 4726 GAGGGAATTTTCTTCTCAGG-TAGTTTCTGCTCCATTTTCTGGTTGAAAAAACGTGGGTT 4784 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| || | || ||| || |||||||| ||||| || || || | |||||||| Sbjct 4785 AATGCCTGGATTAACGTTCTCAAACGAGTTGATTTCACGAGATGAAGGGCTTCATTGTGA 4844 Query 61632 TTTTGC-TGTTT-TGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTGTG 61689 |||||| ||||| | |||||| | || ||| | ||||| || ||| Sbjct 4845 TTTTGCTTGTTTGTTGTATTCA-----TTGTTGAGGAAGAAATTGAGTGAGGATCGAGTG 4899 Query 61690 GGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCC 61749 | |||||||| ||||| || ||| ||| ||||||| || ||| |||||||| Sbjct 4900 AGGGAGATTGTAACAGAGGCCGTTGATATAGAAAGGGAATTTGTGTGTGATGCTTTGCCG 4959 Query 61750 GTCTCACTCATCGGCATGAATTGTGGAC-TAATGTCGCAGTATATTGAATTTGTTGCCGA 61808 || | || | || ||||| || |||| | ||| || || || |||||||| || || Sbjct 4960 GTGGCTCTTGTTGGAATGAA-TGGGGACTTGATGAGCCAATACATAGAATTTGTGGCAGA 5018 Query 61809 -CCGTCTGTTGGTCGATTTGGGTATGAAGC-GGATCTATAATACGAAAAACCCATTTGAT 61866 || ||||| || || |||| || ||||||||| |||| || |||||| Sbjct 5019 TAGGTTGGTTGGAGCCTTGGGATATG--GCAAAATCTATAATGTTCAAAATCCGTTTGAT 5076 Query 61867 TTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGAC 61926 | ||||| |||||||| || | || ||||| ||||| || |||||| | || || || Sbjct 5077 TGGATGGAGTTGATTTCGTTGCAGGGGAAGACTAATTTCTTTGAGAAAAGAGTCGGTGAA 5136 Query 61927 TATCA 61931 ||||| Sbjct 5137 TATCA 5141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397372983950720