Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq7398 199 4e-46 seq8682 165 9e-36 seq1209 150 2e-31 seq16876 131 2e-25 seq3485 86.0 7e-12 >seq7398 Length=4807 Score = 199 bits (220), Expect = 4e-46 Identities = 217/288 (75%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 162157 GCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACT 162216 |||||||| ||| | |||||| || | || |||| || || ||||| || ||||| ||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 162217 GCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCAT 162276 || ||||| || ||||| | ||||| || |||||||| ||||| |||||||| ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 162277 TTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGA 162336 ||||||||| | || || || || | ||| | |||| ||| || | || | |||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 162337 CTCGCTCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGAT 162396 | | |||| || ||||| || ||||| || |||||||| ||||||| |||||| ||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 162397 CCTGAATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGT 162444 ||| ||||||| || ||||| ||||| ||||| ||||| || ||||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGGT 2481 >seq8682 Length=13014 Score = 165 bits (182), Expect = 9e-36 Identities = 187/251 (75%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 160496 ATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCCTTTAACAAC 160555 ||||| || || ||||| || || || || |||||||||||||||||| || |||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 160556 TCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCC 160615 || || ||| | || |||||||| |||||||||||||| || || || |||||||| || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 160616 CTTGGTGTTTCTACCATGGCATTCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTG 160675 | ||| || || ||||| ||||| | ||||||||||| |||||||| || | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 160676 GACAACCAAGGACAAGTTCTGAACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGC 160735 || | ||||| | || | || || ||||| || | ||||||| ||| ||| || Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 160736 ATGGAAGTCAT 160746 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq1209 Length=37697 Score = 150 bits (166), Expect = 2e-31 Identities = 187/254 (74%), Gaps = 3/254 (1%) Strand=Plus/Plus Query 160412 ACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGGTTACAAGTTC 160471 ||||||||| | |||| || || | ||||| ||| || || | ||||| | ||| Sbjct 32455 ACTTCTAGTTTA-TCAGGGAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTC 32513 Query 160472 GGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATC 160531 |||||||||||||| |||| | ||||| || || ||||| || || || || |||||| Sbjct 32514 GGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 32573 Query 160532 TTCCAATATGC--ATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGCTGCTTGGC 160589 ||||||||||| || || |||||||| | ||| | || ||||||| |||||||||| Sbjct 32574 TTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGC 32633 Query 160590 CTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAATCTCAATG 160649 ||| || | ||||||||||| || | ||| || || ||| | ||||| | |||| Sbjct 32634 CTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGAATG 32693 Query 160650 GTTTCAACTTCAAC 160663 ||| || |||||| Sbjct 32694 GTTGAAATTTCAAC 32707 >seq16876 Length=31318 Score = 131 bits (144), Expect = 2e-25 Identities = 196/277 (71%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 160520 GGTCGTTTGATCTTCCAATATGCA--TCCTTTAACAACTCACGCTCTCTGCACTTCTTCC 160577 || || ||| ||||||||||||| | || |||||||| || ||| | || || |||| Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107 Query 160578 TCGCTGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCAT 160637 | |||||||||||||| | || | |||||| || | ||| || || ||||| | Sbjct 28108 TAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163 Query 160638 TCAATCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGA 160697 |||| | ||| ||| || |||||||| | | | || | ||||| || || | Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223 Query 160698 ACACTTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTA 160757 | || ||| |||| | |||||| ||| ||| || | |||||| ||||| || |||| Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283 Query 160758 ACGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 160794 | || || ||||||||||| ||||| ||| ||| ||| Sbjct 28284 ATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq3485 Length=85743 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 161545 GATCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCT 161604 || |||||||||||||| || ||||| || || | || ||||| ||| ||| |||| Sbjct 21365 GACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTTCCTTGTGCCTATTTTGCC 21424 Query 161605 ATTGGCGGTTGGCTTACTGGCACGACTTTCGCTACGAGCTGGTATACCCATGGACTCGCT 161664 | || |||||| |||| || || || || | || ||||||||||||||| | || Sbjct 21425 GTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGGTATACCCATGGATTGGCA 21484 Query 161665 AGTTCCTATCTTGAGGG 161681 ||||||||| | || || Sbjct 21485 AGTTCCTATTTGGAAGG 21501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551098602734400