Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq8682 214 2e-50 seq16876 156 5e-33 seq7398 150 2e-31 seq1209 132 6e-26 seq3977 87.8 2e-12 >seq8682 Length=13014 Score = 214 bits (236), Expect = 2e-50 Identities = 198/251 (79%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 189544 ATCGTTGCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAAC 189603 ||||| ||||||||||| ||||| || || | ||||||||||||||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 189604 TCCCGTTCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCC 189663 || ||||| | || |||||||| ||||| ||||| || || ||||| ||||| ||||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 189664 CTCGGCGTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTT 189723 | || | ||||| ||||| |||||| | ||||| ||||| ||||| ||||| | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 189724 GATGGTCAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGT 189783 ||| ||||||||||||| | || || ||||| || || | ||||||||| ||||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 189784 ATGGAAGTCAT 189794 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 156 bits (172), Expect = 5e-33 Identities = 190/258 (74%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 189578 TCTTCCAATATGCA--TCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCGCTGCCTG 189635 ||||||||||||| | ||||||||||||||||| | || || ||||| ||||| || Sbjct 28058 TCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGCTTG 28117 Query 189636 GCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCAACCTCAA 189695 ||| || | |||| ||| || || | || | ||||| ||||| |||||| | || Sbjct 28118 GCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAA 28173 Query 189696 TGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACACATGGGC 189755 | | | || ||||| |||| | ||||| ||||||||| ||| | | || ||| | Sbjct 28174 TTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTGGCC 28233 Query 189756 AGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAA 189815 ||| || | |||| |||| |||||||| |||||| |||||||| ||||| || || || Sbjct 28234 AGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCAAAA 28293 Query 189816 CTTCCCTCTTGATCTGGC 189833 ||||||||| || || || Sbjct 28294 CTTCCCTCTAGACCTAGC 28311 >seq7398 Length=4807 Score = 150 bits (166), Expect = 2e-31 Identities = 206/288 (72%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 190629 GCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACT 190688 ||||| || || | || || || | || |||| ||||| || ||||| ||||||||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 190689 GCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCAT 190748 || ||||| || ||||| |||||||||| ||||| || ||||| | ||||| ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 190749 TTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGT 190808 ||||||||| | ||||| || || | ||| | |||| | | | || | ||||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 190809 CTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGAT 190868 | | | ||||| ||||| |||||||| || || || || || | | ||| |||||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 190869 CCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTTGAATGAAGGT 190916 || | || |||||||| || || |||||||| || || || ||||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGGT 2481 >seq1209 Length=37697 Score = 132 bits (146), Expect = 6e-26 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 189508 GGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTC 189567 ||||| | || || ||||| |||||||| | | ||||| ||||||||||| ||||| Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 189568 GGTCGTCTTATCTTCCAATATGC--ATCGTTCAACAACTCCCGTTCACTTCACTTCTTCC 189625 || || | |||||||||||||| || ||||||||||| | ||| | || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 189626 TCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCAT 189685 ||||| ||||| | || |||||||||| ||||| | || | ||||| ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 189686 TCAACCTCAATGGGTTCAACTTCAA 189710 ||||| | ||||| | || ||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAA 32706 >seq3977 Length=13071 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 189766 AACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACGCTCACAACTTCCCTCTT 189825 ||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||| Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 189826 GATCTGGCAGC 189836 || || || || Sbjct 75 GACCTAGCTGC 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633760994352000