Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq8682 187 3e-42 seq7398 183 3e-41 seq16876 145 9e-30 seq1209 134 2e-26 seq3977 96.9 4e-15 seq13547 86.0 7e-12 seq3573 86.0 7e-12 seq14341 82.4 9e-11 >seq8682 Length=13014 Score = 187 bits (206), Expect = 3e-42 Identities = 192/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 161265 ATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAAC 161324 ||||| |||||||||||||| || || || ||||||||||||| || ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 161325 TCCCGTTCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCA 161384 || ||||| || || |||||||| || || |||||||| || ||||| |||||||| || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 161385 CTTGGTGTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATG 161444 | ||| | ||| ||||| |||||| | || || ||||| |||||||| || | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 161445 GATGGTCAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGT 161504 ||| |||| || || | || ||||||||||| || | || |||||||| |||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 161505 ATGGAAGTAAT 161515 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq7398 Length=4807 Score = 183 bits (202), Expect = 3e-41 Identities = 212/286 (74%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 164530 CAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTG 164589 ||||||| ||| | || || | || ||||||| ||||| ||||| || |||||||||| Sbjct 2195 CAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTG 2254 Query 164590 CCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACT 164649 | |||||||| ||||| | || ||||| ||||||| |||||| |||||||| || | Sbjct 2255 CAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATT 2314 Query 164650 TCTTTATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTC 164709 |||||||| | ||||| || || | || | |||| ||| || |||| | | ||| Sbjct 2315 TCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTT 2374 Query 164710 TCGCACTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATC 164769 | | | || || ||||| ||||| || || |||||||| ||| | | ||| || |||| Sbjct 2375 TGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGATC 2434 Query 164770 CTGAATTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGG 164815 || |||||||||| |||||||| || || || ||| | || |||| Sbjct 2435 CTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGG 2480 >seq16876 Length=31318 Score = 145 bits (160), Expect = 9e-30 Identities = 195/270 (72%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 161296 TGATCTTCCAATACGCT--TCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGC 161353 || |||||||||| ||| | ||||||||||||||||| || || || ||||| || || Sbjct 28055 TGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGC 28114 Query 161354 ATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCATTCAACCT 161413 |||||||| | |||| |||||| || | ||| | ||| ||||| |||||| | Sbjct 28115 TTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTT 28170 Query 161414 GAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAGTCCTGAACACCTG 161473 || | | || |||||||| | | | ||| |||| || | || | | ||||| Sbjct 28171 AAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTG 28230 Query 161474 GGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTCA 161533 | | || || | || | |||||| ||||||| |||||| ||||| || |||||||| || Sbjct 28231 GCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCA 28290 Query 161534 CAACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 ||||||||||| || || ||| ||| ||| Sbjct 28291 AAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq1209 Length=37697 Score = 134 bits (148), Expect = 2e-26 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 161229 GGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTCGCTGCTCATGGTTACTTC 161288 ||||| | || |||||||| ||||| || | | ||||| |||||||||||||| || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 161289 GGTCGCCTGATCTTCCAATACGCT--TCCTTCAACAACTCCCGTTCGTTGCACTTCTTCC 161346 || || ||||||||||||| ||| | ||||||||||| | ||| || || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 161347 TCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCATGGCAT 161406 || || ||||||| || ||||||||||||| || | ||| | ||| ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 161407 TCAACCTGAACGGATTCAACTTCAAC 161432 ||||| |||| || | || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq3977 Length=13071 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 161473 GGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACGAGCGTAATGCTC 161532 || |||| || | || |||||||| |||||||||||||| ||||| || |||||||||| Sbjct 1 GGTCTGATATTATAAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 60 Query 161533 ACAACTTCCCTCTGGATCTCGCTGCT 161558 ||||||||||||| || || |||||| Sbjct 61 ACAACTTCCCTCTAGACCTAGCTGCT 86 >seq13547 Length=78248 Score = 86.0 bits (94), Expect = 7e-12 Identities = 177/257 (69%), Gaps = 6/257 (2%) Strand=Plus/Minus Query 160604 TCTTTACGTCGGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTG 160663 ||| ||| | || ||||| ||||| | || ||||| || | || || ||||| |||| Sbjct 5583 TCTCTACATTGGATGGTTTGGTGTTTTAATAATCCCTACCTTATTAGCTGCAACT-TCTG 5525 Query 160664 C-TTTATTACT-GCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCC 160721 ||||||| | || ||| || || ||| | || || || | ||||| || | Sbjct 5524 TATTTATTAATTGCCTTCATTACTACTCATCTAGTAGATATTGGTGGTATTTGTAGATAT 5465 Query 160722 GTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCC 160781 ||| |||| | || | ||||||||||| || || ||| |||| | ||||| ||| Sbjct 5464 GTTTCTGGAACTCTAGTTTATGGAAACAATATTATTTCTAGTGCTAATATTCCTGTTTCT 5405 Query 160782 AACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGATGAATGGCTC 160841 | || || ||| | ||||| || || ||||| ||| || || || || |||| | Sbjct 5404 ACAGCTATCGGTTTGCACTTTTATCCAATTTGAAAAGTTG--TC-GTTAATAAATGATTA 5348 Query 160842 TACAATGGTGGTCCTTA 160858 ||||||||||||||||| Sbjct 5347 TACAATGGTGGTCCTTA 5331 >seq3573 Length=19979 Score = 86.0 bits (94), Expect = 7e-12 Identities = 106/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 160713 CGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTT 160772 |||||||| | | |||| || || | || ||||||| || || ||| |||| || | Sbjct 1078 CGTGAACCTGGTTCTGGATCTCTACTTTACTGAAACAATATTATTTCTAGTGCCATTATC 1019 Query 160773 CCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGAT 160832 ||| |||| || ||||| | ||||| || || |||||||||||||| || ||||| Sbjct 1018 CCTACTTCTCCAGCTATTGGGTTGCACTTTTATCCAATTTGGGAAGCTGCCTCCTTTGAT 959 Query 160833 GAATGGCTCTACAA-TGGTGGTCC 160855 ||||| | ||||| |||| |||| Sbjct 958 GAATGATTGTACAATTGGTTGTCC 935 >seq14341 Length=38040 Score = 82.4 bits (90), Expect = 9e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 161296 TGATCTTCCAATACGCT--TCCTTCAACAACTCCCGTTCGTTGCACTTCTTCCTCGCAGC 161353 ||||||||||||| ||| | ||||||||||| ||||| || || |||||||| || || Sbjct 2948 TGATCTTCCAATATGCTAGTGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGC 2889 Query 161354 ATGGCCTGTTGTCGGTATCTGGTT 161377 | |||||| || ||||||||||| Sbjct 2888 TTCGCCTGTAGTAGGTATCTGGTT 2865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559046602083200