Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq7050 334 1e-89 seq8600 190 4e-46 seq7100 185 2e-44 seq737 159 7e-37 seq14093 78.8 2e-12 seq6090 78.8 2e-12 >seq7050 Length=3442 Score = 334 bits (370), Expect = 1e-89 Identities = 270/320 (84%), Gaps = 6/320 (2%) Strand=Plus/Plus Query 18 TGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTGACGG 77 ||||||||| |||||| ||| |||||||||||||||||||| || | | ||||||| Sbjct 1785 TGAAATAGAACCTGAAACCGTACGCCTACAAGCGGTCGGAGCAC-GTAAGT--GTGACGG 1841 Query 78 CGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTTCAG 137 ||||||||||||||||||||||||||||||| | || || || |||||||| |||||| Sbjct 1842 CGTGCCTTTTGCATAATGAGCCTACGAGTTAAT-GTTACTGGCAAGGTTAAGTACTTCAG 1900 Query 138 GCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GAGTTGGTGGCGCTAGACG 196 | ||| ||||| || ||||||||| ||||| ||||||| |||| |||| |||||| Sbjct 1901 GTACGT-AGCCGTAGCGAAAGCGAGTCTTAATAGGGCGATAGAGTCAGTGGTATTAGACG 1959 Query 197 CGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACC 256 ||||||||||||||||||||| | ||||||||||| |||||| | ||||||||| Sbjct 1960 CGAAACCTTGTGATCTACCCATGGGCAGGTTGAAGCTTTGGTAACACAAAGTGGAGGACC 2019 Query 257 GAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCA 316 |||||||| |||||||||||| |||||||||| | ||||||||||||||||||||||| Sbjct 2020 GAACCGGTTGACGTTGAAAAGTCTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCA 2079 Query 317 AACTGGGAAATAGCTCGTAC 336 |||||||||||||||||||| Sbjct 2080 AACTGGGAAATAGCTCGTAC 2099 >seq8600 Length=1328 Score = 190 bits (210), Expect = 4e-46 Identities = 241/326 (74%), Gaps = 9/326 (3%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGA-TTC 69 ||||| |||||||||| |||||| ||| || ||||||| || |||||| | | || Sbjct 1014 AGGGGAGTGAAATAGATCCTGAAACCGTATGCGTACAAGCAGTGGGAGCCCACTTTGTTG 955 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 |||||| |||| ||||||| |||||| | | ||| ||| | ||| ||||| |||| Sbjct 954 GGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATTT-TCAGTGGCGAGCTTAAC 896 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | || || || || ||||||||| ||||| |||||| | ||| | ||| Sbjct 895 CGAATAGGGG-----AGGCGTAGCGAAAGCGAGTCTTAATAGGGCGTCTAGTCGCTGGGA 841 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA-T 248 ||||| ||||||| | |||||| ||| | ||||||||||| |||||| | ||| | Sbjct 840 ATAGACCCGAAACCGGGCGATCTATCCATGGGCAGGTTGAAGGTTAGGTAACAC-TGACT 782 Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308 |||||||||||||| | |||||||||||| |||||||| | || | || ||||||| Sbjct 781 GGAGGACCGAACCGACTACCGTTGAAAAGTTAGCGGATGACCTGTGGATCGGAGTGAAAG 722 Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334 || |||||| || ||| |||||| || Sbjct 721 GCTAATCAAGCTCGGAGATAGCTGGT 696 >seq7100 Length=3288 Score = 185 bits (204), Expect = 2e-44 Identities = 236/324 (73%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| |||| || ||||||| || ||||| | | Sbjct 2262 AGGGGAGTGAAATAGATCCTGAAACCGCATGCATACAAGCAGTGGGAGCACCTTCGTGGT 2321 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| | ||| ||||||||||| Sbjct 2322 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCAGTAGCGAGGTTAACC 2380 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || ||||| || |||| |||| ||||| |||||| ||||| ||| Sbjct 2381 GTATAGGGG-----AGCCGTAGAGAAATCGAGTCTTAATAGGGCGTTTAGTTGCTGGGTA 2435 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| | |||||| ||| ||||||||||||| |||||| | ||| Sbjct 2436 TAGACCCGAAACCAGGCGATCTATCCATGAGCAGGTTGAAGGTTGGGTAACACTAACTGG 2495 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 ||||||||||| |||||||||| |||||||| | || |||||||||||||| Sbjct 2496 AGGACCGAACCCACTGTCGTTGAAAAGCCAGGGGATGACTTGTGGATAGGGGTGAAAGGC 2555 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 ||||||||| || |||||| || Sbjct 2556 TAATCAAACTTGGTGATAGCTGGT 2579 >seq737 Length=443 Score = 159 bits (176), Expect = 7e-37 Identities = 224/311 (72%), Gaps = 10/311 (3%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| || |||||| ||| || ||||| | || |||||| | Sbjct 138 CCCGACGAGGGGAGTGAAAGAGTACCTGAAACCGGATGCTTACAAACAGTGGGAGCCCAA 197 Query 64 TGAT-----TCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 | | | |||||| |||| ||||||| |||||| | | ||| ||| || || | Sbjct 198 GGTTCGTCCTGGGTGACCGCGTACCTTTTGTATAATGGGTCAGCGACTTAAA-GTTACGA 256 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG 178 ||||| ||||| | ||| || || || ||||||||| || ||||||||| Sbjct 257 GCGAGCTTAAGCCGAT-AGGTGG---AGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTC 312 Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238 |||| ||||| ||||| ||||||| |||||||| ||| | ||||| ||||| | ||| Sbjct 313 AGTTCGTGGCTTTAGACCCGAAACCGAGTGATCTAGCCATGTGCAGGATGAAGGTGGGGT 372 Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298 ||| | |||||| ||||||| || |||||||||| | | ||||||| | || || Sbjct 373 AACACCCACTGGAGGTCCGAACCAGTGCCCGTTGAAAAGGTCTTGGATGACGTGTGGCTA 432 Query 299 GGGGTGAAAGG 309 ||||||||||| Sbjct 433 GGGGTGAAAGG 443 >seq14093 Length=47550 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251 ||| ||||||| |||||| ||| ||||||||||||| || |||| | |||| Sbjct 17803 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 17862 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 |||||||||| | || | ||| | |||||||| | || ||||||||||||||| Sbjct 17863 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 17922 Query 312 AATCAAACTGGGAAATAGCTCGT 334 || ||| | ||| |||||| || Sbjct 17923 AACCAAGATCGGATATAGCTGGT 17945 >seq6090 Length=481770 Score = 78.8 bits (86), Expect = 2e-12 Identities = 201/301 (67%), Gaps = 5/301 (2%) Strand=Plus/Plus Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71 |||| |||||||||| | |||| ||| || ||||| || |||| | | | Sbjct 16881 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTC 16940 Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131 |||| |||||||| ||| | |||||||| ||| | | | | || || ||||||||| Sbjct 16941 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 16999 Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191 | ||| ||||| || ||||||||| ||| | ||||| | || || | Sbjct 17000 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 17055 Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251 ||| |||| | |||||||| ||| || |||| ||||| ||| | | |||| Sbjct 17056 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 17115 Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311 || |||||||| | |||||| | | ||||||| | | || ||||||||||| ||| Sbjct 17116 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 17175 Query 312 A 312 | Sbjct 17176 A 17176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972654906880