Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01000140.1
Length=336
Score E
Sequences producing significant alignments: (Bits) Value
seq7050 334 1e-89
seq8600 190 4e-46
seq7100 185 2e-44
seq737 159 7e-37
seq14093 78.8 2e-12
seq6090 78.8 2e-12
>seq7050
Length=3442
Score = 334 bits (370), Expect = 1e-89
Identities = 270/320 (84%), Gaps = 6/320 (2%)
Strand=Plus/Plus
Query 18 TGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGGTGACGG 77
||||||||| |||||| ||| |||||||||||||||||||| || | | |||||||
Sbjct 1785 TGAAATAGAACCTGAAACCGTACGCCTACAAGCGGTCGGAGCAC-GTAAGT--GTGACGG 1841
Query 78 CGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGGCTTCAG 137
||||||||||||||||||||||||||||||| | || || || |||||||| ||||||
Sbjct 1842 CGTGCCTTTTGCATAATGAGCCTACGAGTTAAT-GTTACTGGCAAGGTTAAGTACTTCAG 1900
Query 138 GCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GAGTTGGTGGCGCTAGACG 196
| ||| ||||| || ||||||||| ||||| ||||||| |||| |||| ||||||
Sbjct 1901 GTACGT-AGCCGTAGCGAAAGCGAGTCTTAATAGGGCGATAGAGTCAGTGGTATTAGACG 1959
Query 197 CGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACC 256
||||||||||||||||||||| | ||||||||||| |||||| | |||||||||
Sbjct 1960 CGAAACCTTGTGATCTACCCATGGGCAGGTTGAAGCTTTGGTAACACAAAGTGGAGGACC 2019
Query 257 GAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCA 316
|||||||| |||||||||||| |||||||||| | |||||||||||||||||||||||
Sbjct 2020 GAACCGGTTGACGTTGAAAAGTCTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCA 2079
Query 317 AACTGGGAAATAGCTCGTAC 336
||||||||||||||||||||
Sbjct 2080 AACTGGGAAATAGCTCGTAC 2099
>seq8600
Length=1328
Score = 190 bits (210), Expect = 4e-46
Identities = 241/326 (74%), Gaps = 9/326 (3%)
Strand=Plus/Minus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGA-TTC 69
||||| |||||||||| |||||| ||| || ||||||| || |||||| | | ||
Sbjct 1014 AGGGGAGTGAAATAGATCCTGAAACCGTATGCGTACAAGCAGTGGGAGCCCACTTTGTTG 955
Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129
|||||| |||| ||||||| |||||| | | ||| ||| | ||| ||||| ||||
Sbjct 954 GGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATTT-TCAGTGGCGAGCTTAAC 896
Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189
| | || || || || ||||||||| ||||| |||||| | ||| | |||
Sbjct 895 CGAATAGGGG-----AGGCGTAGCGAAAGCGAGTCTTAATAGGGCGTCTAGTCGCTGGGA 841
Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGA-T 248
||||| ||||||| | |||||| ||| | ||||||||||| |||||| | ||| |
Sbjct 840 ATAGACCCGAAACCGGGCGATCTATCCATGGGCAGGTTGAAGGTTAGGTAACAC-TGACT 782
Query 249 GGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAG 308
|||||||||||||| | |||||||||||| |||||||| | || | || |||||||
Sbjct 781 GGAGGACCGAACCGACTACCGTTGAAAAGTTAGCGGATGACCTGTGGATCGGAGTGAAAG 722
Query 309 GCCAATCAAACTGGGAAATAGCTCGT 334
|| |||||| || ||| |||||| ||
Sbjct 721 GCTAATCAAGCTCGGAGATAGCTGGT 696
>seq7100
Length=3288
Score = 185 bits (204), Expect = 2e-44
Identities = 236/324 (73%), Gaps = 6/324 (2%)
Strand=Plus/Plus
Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70
||||| |||||||||| |||||| |||| || ||||||| || ||||| | |
Sbjct 2262 AGGGGAGTGAAATAGATCCTGAAACCGCATGCATACAAGCAGTGGGAGCACCTTCGTGGT 2321
Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130
||||| |||| ||||||| |||||| | | ||| ||| | ||| |||||||||||
Sbjct 2322 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTCAGTAGCGAGGTTAACC 2380
Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190
| | || ||||| || |||| |||| ||||| |||||| ||||| |||
Sbjct 2381 GTATAGGGG-----AGCCGTAGAGAAATCGAGTCTTAATAGGGCGTTTAGTTGCTGGGTA 2435
Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250
||||| ||||||| | |||||| ||| ||||||||||||| |||||| | |||
Sbjct 2436 TAGACCCGAAACCAGGCGATCTATCCATGAGCAGGTTGAAGGTTGGGTAACACTAACTGG 2495
Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310
||||||||||| |||||||||| |||||||| | || ||||||||||||||
Sbjct 2496 AGGACCGAACCCACTGTCGTTGAAAAGCCAGGGGATGACTTGTGGATAGGGGTGAAAGGC 2555
Query 311 CAATCAAACTGGGAAATAGCTCGT 334
||||||||| || |||||| ||
Sbjct 2556 TAATCAAACTTGGTGATAGCTGGT 2579
>seq737
Length=443
Score = 159 bits (176), Expect = 7e-37
Identities = 224/311 (72%), Gaps = 10/311 (3%)
Strand=Plus/Plus
Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63
||||| ||||| |||||| || |||||| ||| || ||||| | || |||||| |
Sbjct 138 CCCGACGAGGGGAGTGAAAGAGTACCTGAAACCGGATGCTTACAAACAGTGGGAGCCCAA 197
Query 64 TGAT-----TCGGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118
| | | |||||| |||| ||||||| |||||| | | ||| ||| || || |
Sbjct 198 GGTTCGTCCTGGGTGACCGCGTACCTTTTGTATAATGGGTCAGCGACTTAAA-GTTACGA 256
Query 119 GCGAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACG 178
||||| ||||| | ||| || || || ||||||||| || |||||||||
Sbjct 257 GCGAGCTTAAGCCGAT-AGGTGG---AGGCGCAGCGAAAGCGAGTCTGAACAGGGCGTTC 312
Query 179 AGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGT 238
|||| ||||| ||||| ||||||| |||||||| ||| | ||||| ||||| | |||
Sbjct 313 AGTTCGTGGCTTTAGACCCGAAACCGAGTGATCTAGCCATGTGCAGGATGAAGGTGGGGT 372
Query 239 AACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTA 298
||| | |||||| ||||||| || |||||||||| | | ||||||| | || ||
Sbjct 373 AACACCCACTGGAGGTCCGAACCAGTGCCCGTTGAAAAGGTCTTGGATGACGTGTGGCTA 432
Query 299 GGGGTGAAAGG 309
|||||||||||
Sbjct 433 GGGGTGAAAGG 443
>seq14093
Length=47550
Score = 78.8 bits (86), Expect = 2e-12
Identities = 104/143 (73%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 193 GACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTC-GCGGTAACGCGTGATGGA 251
||| ||||||| |||||| ||| ||||||||||||| || |||| | ||||
Sbjct 17803 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 17862
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|||||||||| | || | ||| | |||||||| | || |||||||||||||||
Sbjct 17863 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 17922
Query 312 AATCAAACTGGGAAATAGCTCGT 334
|| ||| | ||| |||||| ||
Sbjct 17923 AACCAAGATCGGATATAGCTGGT 17945
>seq6090
Length=481770
Score = 78.8 bits (86), Expect = 2e-12
Identities = 201/301 (67%), Gaps = 5/301 (2%)
Strand=Plus/Plus
Query 12 GGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCGG 71
|||| |||||||||| | |||| ||| || ||||| || |||| | | |
Sbjct 16881 GGGGAGTGAAATAGAACATGAAACCGTAAGCTCCCAAGCAGTGGGAGGAGCCCGGGGCTC 16940
Query 72 TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGGG 131
|||| |||||||| ||| | |||||||| ||| | | | | || || |||||||||
Sbjct 16941 TGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCA-TAGGCAGTGGCTTGGTTAAGGG 16999
Query 132 CTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGCT 191
| ||| ||||| || ||||||||| ||| | ||||| | || || |
Sbjct 17000 AACCCA--CCGG-AGCCGTAGCGAAAGCGAGTCTTCATAGGGCAATT-GTCACTGCTTAT 17055
Query 192 AGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGA 251
||| |||| | |||||||| ||| || |||| ||||| ||| | | ||||
Sbjct 17056 GGACCCGAACCTGGGTGATCTATCCATGACCAGGATGAAGCTTGGGTGAAACTAAGTGGA 17115
Query 252 GGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCC 311
|| |||||||| | |||||| | | ||||||| | | || ||||||||||| |||
Sbjct 17116 GGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATGCC 17175
Query 312 A 312
|
Sbjct 17176 A 17176
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 972654906880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |