Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq11782 489 3e-136 seq7136 244 2e-62 seq1592 244 2e-62 seq7215 235 1e-59 seq12950 228 1e-57 seq2222 89.7 9e-16 >seq11782 Length=94184 Score = 489 bits (542), Expect = 3e-136 Identities = 299/315 (95%), Gaps = 2/315 (1%) Strand=Plus/Plus Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGG-G 63 ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || | Sbjct 92733 TGGTCCGGCCGGGCCTTTCCTTCTGGGGAACCGCATGCCCTTCACTGGGTGTGTTGGCTG 92792 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACA 123 | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 92793 ATCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTCGCTCGAATACA 92852 Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 183 ||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 92853 TTAGCATGGAATAATGGAATAGGACGTGCGTTTCTATTTTGTTGGTTTCTAGGAACGCCG 92912 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 92913 TAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTG 92972 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 |||||||||||||||||||||||||||||| || ||||||||||||||||||||||| | Sbjct 92973 GATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-G 93031 Query 304 AACGAAAGTTAGGGG 318 ||||||||||||||| Sbjct 93032 AACGAAAGTTAGGGG 93046 Score = 241 bits (266), Expect = 2e-61 Identities = 247/316 (78%), Gaps = 9/316 (3%) Strand=Plus/Plus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||||||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 81666 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 81725 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 81726 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 81785 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| ||| | ||| ||| || Sbjct 81786 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTGGCCTTCG-GGATCGGA 81843 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 81844 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 81903 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 81904 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 81962 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 81963 GAACGAAAGTTGGGGG 81978 >seq7136 Length=2357723 Score = 244 bits (270), Expect = 2e-62 Identities = 247/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||||||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 1380164 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 1380223 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 1380224 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 1380283 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 1380284 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 1380342 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 1380343 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 1380402 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 1380403 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 1380461 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 1380462 GAACGAAAGTTGGGGG 1380477 Score = 244 bits (270), Expect = 2e-62 Identities = 247/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||||||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 1389463 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 1389522 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 1389523 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 1389582 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 1389583 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 1389641 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 1389642 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 1389701 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 1389702 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 1389760 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 1389761 GAACGAAAGTTGGGGG 1389776 >seq1592 Length=28874 Score = 244 bits (270), Expect = 2e-62 Identities = 248/316 (78%), Gaps = 9/316 (3%) Strand=Plus/Plus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||||||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 19025 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 19084 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 19085 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 19144 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 19145 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 19203 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 |||| |||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 19204 GTAA-GATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 19262 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || ||||||||||||||||||||||| Sbjct 19263 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG- 19321 Query 303 GAACGAAAGTTAGGGG 318 |||||||||||||||| Sbjct 19322 GAACGAAAGTTAGGGG 19337 Score = 244 bits (270), Expect = 2e-62 Identities = 247/316 (78%), Gaps = 8/316 (3%) Strand=Plus/Plus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||||||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 27803 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 27862 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 27863 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 27922 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 27923 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 27981 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 27982 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 28041 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 28042 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 28100 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 28101 GAACGAAAGTTGGGGG 28116 >seq7215 Length=344122 Score = 235 bits (260), Expect = 1e-59 Identities = 246/316 (78%), Gaps = 9/316 (3%) Strand=Plus/Minus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||||||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 9761 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 9702 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| |||||||||| | ||||||| |||| |||| | |||| Sbjct 9701 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTCT-CAAAGCAAGCCTACGCTCTGTATAC 9643 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 9642 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 9584 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||||||| Sbjct 9583 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 9524 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302 |||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||| Sbjct 9523 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 9465 Query 303 GAACGAAAGTTAGGGG 318 ||||||||||| |||| Sbjct 9464 GAACGAAAGTTGGGGG 9449 >seq12950 Length=66472 Score = 228 bits (252), Expect = 1e-57 Identities = 232/297 (78%), Gaps = 8/297 (3%) Strand=Plus/Plus Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63 |||||||| | | ||||||| | ||| ||| || |||| ||||| | | || | Sbjct 3875 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGAGTCGTGC 3934 Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122 || | || |||||||||| ||||||||||| |||||||| |||| |||| | |||| Sbjct 3935 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 3994 Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182 |||||||||| |||| | |||||| | |||| ||||| |||||| | ||| || Sbjct 3995 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGAA 4053 Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242 ||||||||||| ||||| ||||||||| | ||||||| | |||||||||||||||||| Sbjct 4054 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTCA-TAGTCAGAGGTGAAATTCTT 4112 Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATC 299 |||||||| ||||| ||| ||||||||||| || ||||||||||||||||||||| Sbjct 4113 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATC 4169 >seq2222 Length=2984400 Score = 89.7 bits (98), Expect = 9e-16 Identities = 173/245 (71%), Gaps = 9/245 (4%) Strand=Plus/Minus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG-GCCTTTGCTCGA-ATACATTAGCATGG 132 ||||||| || ||| ||||||| ||||||| |||| || || | ||| |||||| || Sbjct 2947161 TTACTTTAAAGAAACTAGAGTGCGCAAAGCAATGCCTATG-TCTATATATATTAGCTGGG 2947103 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||| | ||||| | | || ||| |||||| || | | | |||||||||| Sbjct 2947102 GATAACATTGTAGGATTT-CTGTCACATTCTGTTGGCTTTACGAATCTGAGTAATGATTA 2947044 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 ||| ||| | | || | |||||| || || | |||||||||| | |||||| Sbjct 2947043 ATATGGACAATTAGGCCATT-AGTATTTCATAGTAAATGGTGAAATTCCTATATTTAT-- 2946987 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAA-GGATGTTTTCATTAATCAGTGAACGAAAG 311 ||| | ||| ||| | |||| ||| || |||||||||||||||||| |||||||| Sbjct 2946986 AAGGCAAACAACTACAAAAGTGTTTGTTAAAGGATGTTTTCATTAATCA-AGAACGAAAA 2946928 Query 312 TTAGG 316 || || Sbjct 2946927 TTGGG 2946923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915063497920