Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq11782 489 3e-136
seq7136 244 2e-62
seq1592 244 2e-62
seq7215 235 1e-59
seq12950 228 1e-57
seq2222 89.7 9e-16
>seq11782
Length=94184
Score = 489 bits (542), Expect = 3e-136
Identities = 299/315 (95%), Gaps = 2/315 (1%)
Strand=Plus/Plus
Query 5 TGGTCCGGCCGGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGG-G 63
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |
Sbjct 92733 TGGTCCGGCCGGGCCTTTCCTTCTGGGGAACCGCATGCCCTTCACTGGGTGTGTTGGCTG 92792
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACA 123
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 92793 ATCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTCGCTCGAATACA 92852
Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 183
||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 92853 TTAGCATGGAATAATGGAATAGGACGTGCGTTTCTATTTTGTTGGTTTCTAGGAACGCCG 92912
Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 92913 TAATGATTAATAGGGATAGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTG 92972
Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 92973 GATTTATTGAAGACTAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG-G 93031
Query 304 AACGAAAGTTAGGGG 318
|||||||||||||||
Sbjct 93032 AACGAAAGTTAGGGG 93046
Score = 241 bits (266), Expect = 2e-61
Identities = 247/316 (78%), Gaps = 9/316 (3%)
Strand=Plus/Plus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
|||||||| | | ||||||| | ||| ||| || |||| ||||| | | || |
Sbjct 81666 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 81725
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | || |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 81726 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 81785
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | |||| ||||| ||| | ||| ||| ||
Sbjct 81786 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTGGCCTTCG-GGATCGGA 81843
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 81844 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 81903
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 81904 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 81962
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 81963 GAACGAAAGTTGGGGG 81978
>seq7136
Length=2357723
Score = 244 bits (270), Expect = 2e-62
Identities = 247/316 (78%), Gaps = 8/316 (3%)
Strand=Plus/Plus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
|||||||| | | ||||||| | ||| ||| || |||| ||||| | | || |
Sbjct 1380164 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 1380223
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | || |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 1380224 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 1380283
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | |||| ||||| |||||| | ||| ||
Sbjct 1380284 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 1380342
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 1380343 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 1380402
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 1380403 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 1380461
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 1380462 GAACGAAAGTTGGGGG 1380477
Score = 244 bits (270), Expect = 2e-62
Identities = 247/316 (78%), Gaps = 8/316 (3%)
Strand=Plus/Plus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
|||||||| | | ||||||| | ||| ||| || |||| ||||| | | || |
Sbjct 1389463 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 1389522
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | || |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 1389523 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 1389582
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | |||| ||||| |||||| | ||| ||
Sbjct 1389583 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 1389641
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 1389642 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 1389701
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 1389702 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 1389760
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 1389761 GAACGAAAGTTGGGGG 1389776
>seq1592
Length=28874
Score = 244 bits (270), Expect = 2e-62
Identities = 248/316 (78%), Gaps = 9/316 (3%)
Strand=Plus/Plus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
|||||||| | | ||||||| | ||| ||| || |||| ||||| | | || |
Sbjct 19025 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 19084
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | || |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 19085 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 19144
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | |||| ||||| |||||| | ||| ||
Sbjct 19145 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 19203
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
|||| |||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 19204 GTAA-GATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 19262
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||||
Sbjct 19263 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAG- 19321
Query 303 GAACGAAAGTTAGGGG 318
||||||||||||||||
Sbjct 19322 GAACGAAAGTTAGGGG 19337
Score = 244 bits (270), Expect = 2e-62
Identities = 247/316 (78%), Gaps = 8/316 (3%)
Strand=Plus/Plus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
|||||||| | | ||||||| | ||| ||| || |||| ||||| | | || |
Sbjct 27803 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 27862
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | || |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 27863 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 27922
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | |||| ||||| |||||| | ||| ||
Sbjct 27923 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 27981
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 27982 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 28041
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 28042 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 28100
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 28101 GAACGAAAGTTGGGGG 28116
>seq7215
Length=344122
Score = 235 bits (260), Expect = 1e-59
Identities = 246/316 (78%), Gaps = 9/316 (3%)
Strand=Plus/Minus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
|||||||| | | ||||||| | ||| ||| || |||| ||||| | | || |
Sbjct 9761 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGGGTCGTGC 9702
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | || |||||||||| |||||||||| | ||||||| |||| |||| | ||||
Sbjct 9701 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTCT-CAAAGCAAGCCTACGCTCTGTATAC 9643
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | |||| ||||| |||||| | ||| ||
Sbjct 9642 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGGA 9584
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||| || ||||||||||||||||||
Sbjct 9583 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTT 9524
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGT 302
|||||||| ||||| ||| ||||||||||| || ||||||||||||||||||||||
Sbjct 9523 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-A 9465
Query 303 GAACGAAAGTTAGGGG 318
||||||||||| ||||
Sbjct 9464 GAACGAAAGTTGGGGG 9449
>seq12950
Length=66472
Score = 228 bits (252), Expect = 1e-57
Identities = 232/297 (78%), Gaps = 8/297 (3%)
Strand=Plus/Plus
Query 9 CCGGCCGGGCCTTTCCTTCTG---GGGATCCGCA--TGCCCTTCACTGGGTGTGCCGGGG 63
|||||||| | | ||||||| | ||| ||| || |||| ||||| | | || |
Sbjct 3875 CCGGCCGGCTCGTCCCTTCTGCCGGCGATGCGCTCCTGGCCTTAACTGGCCGAGTCGTGC 3934
Query 64 AGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATAC 122
|| | || |||||||||| ||||||||||| |||||||| |||| |||| | ||||
Sbjct 3935 CACCGGCGCTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGTATAC 3994
Query 123 ATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCC 182
|||||||||| |||| | |||||| | |||| ||||| |||||| | ||| ||
Sbjct 3995 ATTAGCATGGGATAACATCATAGGATTT-CGGTCCTATTCTGTTGGCCTTCGGGATCGAA 4053
Query 183 GTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTT 242
||||||||||| ||||| ||||||||| | ||||||| | ||||||||||||||||||
Sbjct 4054 GTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTCA-TAGTCAGAGGTGAAATTCTT 4112
Query 243 GGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATC 299
|||||||| ||||| ||| ||||||||||| || |||||||||||||||||||||
Sbjct 4113 GGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATC 4169
>seq2222
Length=2984400
Score = 89.7 bits (98), Expect = 9e-16
Identities = 173/245 (71%), Gaps = 9/245 (4%)
Strand=Plus/Minus
Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAG-GCCTTTGCTCGA-ATACATTAGCATGG 132
||||||| || ||| ||||||| ||||||| |||| || || | ||| |||||| ||
Sbjct 2947161 TTACTTTAAAGAAACTAGAGTGCGCAAAGCAATGCCTATG-TCTATATATATTAGCTGGG 2947103
Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192
|||| | ||||| | | || ||| |||||| || | | | ||||||||||
Sbjct 2947102 GATAACATTGTAGGATTT-CTGTCACATTCTGTTGGCTTTACGAATCTGAGTAATGATTA 2947044
Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252
||| ||| | | || | |||||| || || | |||||||||| | ||||||
Sbjct 2947043 ATATGGACAATTAGGCCATT-AGTATTTCATAGTAAATGGTGAAATTCCTATATTTAT-- 2946987
Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAA-GGATGTTTTCATTAATCAGTGAACGAAAG 311
||| | ||| ||| | |||| ||| || |||||||||||||||||| ||||||||
Sbjct 2946986 AAGGCAAACAACTACAAAAGTGTTTGTTAAAGGATGTTTTCATTAATCA-AGAACGAAAA 2946928
Query 312 TTAGG 316
|| ||
Sbjct 2946927 TTGGG 2946923
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915063497920
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