Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01000345.1 Length=193 Score E Sequences producing significant alignments: (Bits) Value seq8600 188 7e-46 seq11122 122 9e-26 seq7100 102 8e-20 >seq8600 Length=1328 Score = 188 bits (208), Expect = 7e-46 Identities = 113/119 (95%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 75 AGCTCCCGGCCTTAGAATCCCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGG 134 ||||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct 1 AGCTCTCGGCCTTAAGATCCCGGATTTACCTAAGATCTCAGCCTACCACCTTAAACTTGG 60 Query 135 ACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCATTAACCAGAAGTA 193 |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 ACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCAATAACCAGAAGTA 119 >seq11122 Length=782 Score = 122 bits (134), Expect = 9e-26 Identities = 136/178 (76%), Gaps = 9/178 (5%) Strand=Plus/Minus Query 5 CTGAAGCTTAGAAGCTTTTCTTGGAAGCATGGCATCAACCACTTCGTCATCTAAAAGATA 64 ||||||||||| |||||||| ||||||| ||| |||| |||||| ||| |||| Sbjct 642 CTGAAGCTTAGGAGCTTTTCCTGGAAGCGTGGTATCAGTGACTTCGCCAT---AAAGG-- 588 Query 65 ACTCGTCATCAGCTCCCGGCCTTAGA--ATCCCGGATTTACCTAAGATTCCAGCCTACCA 122 |||||| || | | ||| |||| | ||||||||||| || ||||| | | |||||| Sbjct 587 -CTCGTC-TCGGTGCTCGGTCTTAAAGGATCCCGGATTTGCCAAAGATCCAAACCTACCG 530 Query 123 CCTTAAACTTGGACAACCAACGCCAAGCTGGCCTAGCCTTCTCCGTCCCTCCATCGCA 180 |||| | |||||||||||||| | |||| |||||||||||||||||||||| Sbjct 529 CCTTTCCCCAGGACAACCAACGCCTGGTACACCTAACCTTCTCCGTCCCTCCATCGCA 472 >seq7100 Length=3288 Score = 102 bits (112), Expect = 8e-20 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 93 CCCGGATTTACCTAAGATTCCAGCCTACCACCTTAAACTTGGACAACCAACGCCAAGCTG 152 ||||||||| |||||||| | |||||| |||| || |||||||||||||||| |||| Sbjct 3269 CCCGGATTTGCCTAAGATGCATGCCTACTGCCTTCCACCTGGACAACCAACGCCAGGCTG 3210 Query 153 GCCTAGCCTTCTCCGTCCCTCCATCGCATTAACCAGAAGTA 193 | || |||||||||||| |||||||||| |||||||| Sbjct 3209 ACTTAACCTTCTCCGTCCTCTCATCGCATTACACAGAAGTA 3169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518325096870