Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01000370.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq7050 174 1e-41 seq7100 95.1 1e-17 >seq7050 Length=3442 Score = 174 bits (192), Expect = 1e-41 Identities = 146/176 (83%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 6 ACGGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACG 65 |||| ||||||||||||| | ||||||| ||||||||||||||||||||| |||||||| Sbjct 1318 ACGGCGGATGCCTAGGCTTTGAGAGGCGATGAAGGACGTGATAAGCTGCGATAAGCTACG 1377 Query 66 GGGATTGGCACATACGAATTGATCCGTAGATATCCGAATGGGGCAACCCGATATATTGGA 125 |||| |||||||||| ||| |||||||||| |||||||||| ||||||| | ||| | Sbjct 1378 GGGAGCGGCACATACGCATTAATCCGTAGATTTCCGAATGGGACAACCCGGCAGGTTGAA 1437 Query 126 GATATATCATAACGCTAGGCGTTAG-GCGAACGTGGGGAACTGAAACATCTAAGTA 180 | | ||| || || || || |||||||||||||||||||||||||||||| Sbjct 1438 GGCCTGTCACTGCG-TAAGC---AGAGCGAACGTGGGGAACTGAAACATCTAAGTA 1489 >seq7100 Length=3288 Score = 95.1 bits (104), Expect = 1e-17 Identities = 137/188 (73%), Gaps = 18/188 (10%) Strand=Plus/Plus Query 8 GGTGGATGCCTAGGCTCTCGGAGGCGAAGAAGGACGTGATAAGCTGCGAAAAGCTACGGG 67 ||||||||||| ||| || ||||||| ||| ||||| ||| |||||| ||||| |||| Sbjct 1801 GGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTAATAGCCTGCGATAAGCTCCGGG 1860 Query 68 GA-TTGGCACATACGAATTGATCCGTAGATATCCGAATGGGG----CAACCCGATATATT 122 || |||| ||| |||||||| |||| || |||||||| | ||||| |||| Sbjct 1861 GAGGCGGCAAATATCCTTTGATCCGGAGATTTCTGAATGGGGGAACCCACCCGCTATA-A 1919 Query 123 GGAGATATATCATAACGC--------TAGGC--GTTAGGCGAACGTGGGGAACTGAAACA 172 || | |||||||| || ||||| | | ||||||| |||||| ||||||| Sbjct 1920 GGCG-GGTATCATAA-GCTGAATACATAGGCTTATGAAGCGAACGAGGGGAAGTGAAACA 1977 Query 173 TCTAAGTA 180 ||| |||| Sbjct 1978 TCTCAGTA 1985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476731107615