Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq7100 363 4e-98 seq10559 349 9e-94 seq11276 333 7e-89 seq6090 230 6e-58 seq2083 158 3e-36 seq7050 86.0 2e-14 seq1924 80.6 7e-13 >seq7100 Length=3288 Score = 363 bits (402), Expect = 4e-98 Identities = 322/401 (80%), Gaps = 1/401 (0%) Strand=Plus/Plus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 88 AGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTT 147 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 ||||||| ||||||||||||||||| ||| |||||| | |||| || |||||||||| Sbjct 148 AATCGGATTTACTGGGCGTAAAGCGCGCGTAGGCGGCTAATTAAGTCAAATGTGAAATCC 207 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189 ||| ||||||| ||||||||||||| | |||| |||||||||| ||||| | || Sbjct 208 CCGAGCTTAACTTGGGAATTGCATTCGATACTGGTTAGCTAGAGTGTGGGAGAGGAGAGT 267 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | |||||| ||||||| || |||| | | |||||| |||| |||||||| Sbjct 268 GGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAAAAGCGAAGGC 327 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 ||| | ||||| || |||||| | ||||||| |||||||| ||| |||||||| Sbjct 328 AGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGGATTAGA 387 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGG-ATTTACTTCCTTG 368 ||||||||||||||| ||| |||||||| || ||||| ||||||| ||| | || Sbjct 388 TACCCTGGTAGTCCATGCCGTAAACGATGTCTACTAGCCGTTGGGGCCTTTGAGGCTTTA 447 Query 369 GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || |||||||||| |||| ||||||||||||| ||| Sbjct 448 GTGGCGCAGCTAACGCGATAAGTAGACCGCCTGGGGAGTAC 488 >seq10559 Length=871 Score = 349 bits (386), Expect = 9e-94 Identities = 323/408 (79%), Gaps = 1/408 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | ||||||||| |||||||||| |||||||||||||||||||||||| |||| || Sbjct 31 TACCGGGAGAATAAGCTCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGAGC 90 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| ||||||||||||||||||||||| || |||||| | |||||| || || Sbjct 91 TAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGCTTTGTAAGTTAGAGGT 150 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 |||| ||| | ||| ||| |||| ||| |||| |||||| || || | ||| Sbjct 151 GAAAGCCCGGAGCTCAACTCCGGAACTGCCTTTGATACTGCATCGCTTGAATCCAGGAGA 210 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||||||| |||||| ||||||| ||||||||| ||| |||||||| ||| Sbjct 211 GGTGAGTGGAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTGG 270 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||| || | |||| | | ||||||| | | |||||||||||||||||||||| Sbjct 271 CGAAGGCGGCTCACTGGACTGGTATTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAG 330 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGT-TGGGGATTTAC 361 |||||||||||||||||||||||||| |||||||| |||||| ||| ||| | || Sbjct 331 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGATAACTAGCTGTCCGGGCACTTGG 390 Query 362 TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | | | ||| || ||||||||| | ||||| ||||||||||| ||| Sbjct 391 TGCTTGGGTGGCGCAGCTAACGCATTAAGTTATCCGCCTGGGGAGTAC 438 >seq11276 Length=759 Score = 333 bits (368), Expect = 7e-89 Identities = 245/283 (87%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 56 AGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGA 115 ||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 2 AGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGTAGGCGGTTCGTTAAGT 61 Query 116 CAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA-CTAGAGT 174 | | ||||||| ||||||||| ||||||||||| ||| | | |||| ||| ||||||| Sbjct 62 CTGTTGTGAAAGCCCCGGGCTCAACCTGGGAATGGCAATGGATACTG-GCGAGCTAGAGT 120 Query 175 GTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAAC 234 |||||||||| ||||||||||| ||||||| |||||||||||||| || |||||||| Sbjct 121 GTGTCAGAGGATGGTGGAATTCCCGGTGTAGCGGTGAAATGCGTAGAGATCGGGAGGAAC 180 Query 235 ACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGA 294 | || |||||||||| ||| |||||| |||||||||||| | |||||||||| |||||| Sbjct 181 ATCAGTGGCGAAGGCGGCCATCTGGGACAACACTGACGCTGAGGCACGAAAGCATGGGGA 240 Query 295 GCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 || ||| ||||||||||||||||||||||| ||| |||||||| Sbjct 241 GCGAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 283 >seq6090 Length=481770 Score = 230 bits (254), Expect = 6e-58 Identities = 297/409 (73%), Gaps = 2/409 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||| Sbjct 12893 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 12952 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | | |||| | | || Sbjct 12953 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 13012 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||| |||| ||| || | | ||| | || |||| | || Sbjct 13013 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 13072 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||| | ||| ||| |||||||||||||| || | | ||||||||| || Sbjct 13073 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 13132 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| |||||||| || | |||||||| ||||||| || | Sbjct 13133 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 13192 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362 |||||||||||| ||||||| ||| |||||||| ||||| | || | | | Sbjct 13193 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 13252 Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || || || ||||||||||||| |||| ||||||||||| ||| Sbjct 13253 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 13301 >seq2083 Length=391 Score = 158 bits (174), Expect = 3e-36 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct 180 GAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 239 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||| ||| |||| ||||| || || |||||| | | || ||| |||||||||| Sbjct 240 TCCGGATTTATTGGGTTTAAAGGGTCCGTAGGCGGATTAATCAGTCAGTGGTGAAATCCC 299 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 ||||||| |||| ||| ||| |||| | || ||||| | | | || || Sbjct 300 TTAGCTTAACTAAGGAACTGCCATTGATACTGTTAGTCTTGAGTGAGGTTGCAGTGGCTG 359 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGAT 222 |||| ||||||| ||||||||| ||||| Sbjct 360 GAATGTGTAGTGTAGCGGTGAAATGCTTAGAT 391 >seq7050 Length=3442 Score = 86.0 bits (94), Expect = 2e-14 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 290 GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTG 349 ||||||| ||||||||||||||||||||||||||||||| |||||||| |||| ||| Sbjct 1 GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGCTAACTCGTTT 60 Query 350 TTGGG 354 ||||| Sbjct 61 TTGGG 65 >seq1924 Length=26490 Score = 80.6 bits (88), Expect = 7e-13 Identities = 74/91 (81%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 238 AATGGCGAAGGCAGCCCCCTGGG-ATAACACTGACGCTCATGCACGAAAGCGTGGGGAGC 296 || |||||||||| ||| || | |||| ||||||| | | | ||||| || |||| ||| Sbjct 16085 AAAGGCGAAGGCAACCCTCTATGTATAA-ACTGACGTTGAGGGACGAAGGCTTGGGTAGC 16027 Query 297 AAACAGGATTAGATACCCTGGTAGTCCACGC 327 ||||||||||||||||||| ||||||| || Sbjct 16026 AAACAGGATTAGATACCCTAATAGTCCAAGC 15996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289407656160