Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01000383.1
Length=435
Score E
Sequences producing significant alignments: (Bits) Value
seq7100 363 4e-98
seq10559 349 9e-94
seq11276 333 7e-89
seq6090 230 6e-58
seq2083 158 3e-36
seq7050 86.0 2e-14
seq1924 80.6 7e-13
>seq7100
Length=3288
Score = 363 bits (402), Expect = 4e-98
Identities = 322/401 (80%), Gaps = 1/401 (0%)
Strand=Plus/Plus
Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 88 AGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTT 147
Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129
||||||| ||||||||||||||||| ||| |||||| | |||| || ||||||||||
Sbjct 148 AATCGGATTTACTGGGCGTAAAGCGCGCGTAGGCGGCTAATTAAGTCAAATGTGAAATCC 207
Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189
||| ||||||| ||||||||||||| | |||| |||||||||| ||||| | ||
Sbjct 208 CCGAGCTTAACTTGGGAATTGCATTCGATACTGGTTAGCTAGAGTGTGGGAGAGGAGAGT 267
Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249
|||||| | |||||| ||||||| || |||| | | |||||| |||| ||||||||
Sbjct 268 GGAATTTCGTGTGTAGGGGTGAAATCCGGAGATCTACGAAGGAACGCCAAAAGCGAAGGC 327
Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309
||| | ||||| || |||||| | ||||||| |||||||| ||| ||||||||
Sbjct 328 AGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGGATTAGA 387
Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGG-ATTTACTTCCTTG 368
||||||||||||||| ||| |||||||| || ||||| ||||||| ||| | ||
Sbjct 388 TACCCTGGTAGTCCATGCCGTAAACGATGTCTACTAGCCGTTGGGGCCTTTGAGGCTTTA 447
Query 369 GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || |||||||||| |||| ||||||||||||| |||
Sbjct 448 GTGGCGCAGCTAACGCGATAAGTAGACCGCCTGGGGAGTAC 488
>seq10559
Length=871
Score = 349 bits (386), Expect = 9e-94
Identities = 323/408 (79%), Gaps = 1/408 (0%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|||| | ||||||||| |||||||||| |||||||||||||||||||||||| |||| ||
Sbjct 31 TACCGGGAGAATAAGCTCCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGAGC 90
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||| ||||||||||||||||||||||| || |||||| | |||||| || ||
Sbjct 91 TAGCGTTGTTCGGAATTACTGGGCGTAAAGCGCACGTAGGCGGCTTTGTAAGTTAGAGGT 150
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
|||| ||| | ||| ||| |||| ||| |||| |||||| || || | |||
Sbjct 151 GAAAGCCCGGAGCTCAACTCCGGAACTGCCTTTGATACTGCATCGCTTGAATCCAGGAGA 210
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||||||| |||||| ||||||| ||||||||| ||| |||||||| |||
Sbjct 211 GGTGAGTGGAATTCCGAGTGTAGAGGTGAAATTCGTAGATATTCGGAAGAACACCAGTGG 270
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
||||||| || | |||| | | ||||||| | | ||||||||||||||||||||||
Sbjct 271 CGAAGGCGGCTCACTGGACTGGTATTGACGCTGAGGTGCGAAAGCGTGGGGAGCAAACAG 330
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGT-TGGGGATTTAC 361
|||||||||||||||||||||||||| |||||||| |||||| ||| ||| | ||
Sbjct 331 GATTAGATACCCTGGTAGTCCACGCCGTAAACGATGATAACTAGCTGTCCGGGCACTTGG 390
Query 362 TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
| | | ||| || ||||||||| | ||||| ||||||||||| |||
Sbjct 391 TGCTTGGGTGGCGCAGCTAACGCATTAAGTTATCCGCCTGGGGAGTAC 438
>seq11276
Length=759
Score = 333 bits (368), Expect = 7e-89
Identities = 245/283 (87%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 56 AGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGA 115
||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2 AGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGTAGGCGGTTCGTTAAGT 61
Query 116 CAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA-CTAGAGT 174
| | ||||||| ||||||||| ||||||||||| ||| | | |||| ||| |||||||
Sbjct 62 CTGTTGTGAAAGCCCCGGGCTCAACCTGGGAATGGCAATGGATACTG-GCGAGCTAGAGT 120
Query 175 GTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAAC 234
|||||||||| ||||||||||| ||||||| |||||||||||||| || ||||||||
Sbjct 121 GTGTCAGAGGATGGTGGAATTCCCGGTGTAGCGGTGAAATGCGTAGAGATCGGGAGGAAC 180
Query 235 ACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGA 294
| || |||||||||| ||| |||||| |||||||||||| | |||||||||| ||||||
Sbjct 181 ATCAGTGGCGAAGGCGGCCATCTGGGACAACACTGACGCTGAGGCACGAAAGCATGGGGA 240
Query 295 GCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337
|| ||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 241 GCGAACGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 283
>seq6090
Length=481770
Score = 230 bits (254), Expect = 6e-58
Identities = 297/409 (73%), Gaps = 2/409 (0%)
Strand=Plus/Plus
Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62
|| ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| |||
Sbjct 12893 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGATGC 12952
Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122
|||||||| |||||| | |||||||||||||| | ||| || | | |||| | | ||
Sbjct 12953 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTCCGCCGT 13012
Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182
||||||| ||||| |||| ||| || | | ||| | || |||| | ||
Sbjct 13013 CAAATCCCAGGGCTCAACCCTGGACAGGCGGTGGAAACTACCAAGCTGGAGTACGGTAGG 13072
Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242
|| | |||||| | ||| ||| |||||||||||||| || | | ||||||||| ||
Sbjct 13073 GGCAGAGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGAGATCGGAAAGAACACCAACGG 13132
Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302
|||| ||| | ||||| |||||||| || | |||||||| ||||||| || |
Sbjct 13133 CGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTAGGGGAGCGAATGG 13192
Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGATTTACT 362
|||||||||||| ||||||| ||| |||||||| ||||| | || | | |
Sbjct 13193 GATTAGATACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAGGCGCTGTGCGTATCGA 13252
Query 363 TCCTTG--GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409
|| || || ||||||||||||| |||| ||||||||||| |||
Sbjct 13253 CCCGTGCAGTGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 13301
>seq2083
Length=391
Score = 158 bits (174), Expect = 3e-36
Identities = 162/212 (76%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70
||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct 180 GAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTA 239
Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130
|||| ||| |||| ||||| || || |||||| | | || ||| ||||||||||
Sbjct 240 TCCGGATTTATTGGGTTTAAAGGGTCCGTAGGCGGATTAATCAGTCAGTGGTGAAATCCC 299
Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190
||||||| |||| ||| ||| |||| | || ||||| | | | || ||
Sbjct 300 TTAGCTTAACTAAGGAACTGCCATTGATACTGTTAGTCTTGAGTGAGGTTGCAGTGGCTG 359
Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGAT 222
|||| ||||||| ||||||||| |||||
Sbjct 360 GAATGTGTAGTGTAGCGGTGAAATGCTTAGAT 391
>seq7050
Length=3442
Score = 86.0 bits (94), Expect = 2e-14
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 290 GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTG 349
||||||| ||||||||||||||||||||||||||||||| |||||||| |||| |||
Sbjct 1 GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGCTAACTCGTTT 60
Query 350 TTGGG 354
|||||
Sbjct 61 TTGGG 65
>seq1924
Length=26490
Score = 80.6 bits (88), Expect = 7e-13
Identities = 74/91 (81%), Gaps = 2/91 (2%)
Strand=Plus/Minus
Query 238 AATGGCGAAGGCAGCCCCCTGGG-ATAACACTGACGCTCATGCACGAAAGCGTGGGGAGC 296
|| |||||||||| ||| || | |||| ||||||| | | | ||||| || |||| |||
Sbjct 16085 AAAGGCGAAGGCAACCCTCTATGTATAA-ACTGACGTTGAGGGACGAAGGCTTGGGTAGC 16027
Query 297 AAACAGGATTAGATACCCTGGTAGTCCACGC 327
||||||||||||||||||| ||||||| ||
Sbjct 16026 AAACAGGATTAGATACCCTAATAGTCCAAGC 15996
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1289407656160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |