Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq14093 149 9e-34 seq6284 140 5e-31 seq7050 123 3e-26 seq6090 116 5e-24 seq11122 107 3e-21 seq8932 80.6 4e-13 >seq14093 Length=47550 Score = 149 bits (164), Expect = 9e-34 Identities = 179/241 (74%), Gaps = 12/241 (5%) Strand=Plus/Minus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | |||| Sbjct 19125 TTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCCTG 19067 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||| |||||||||||| ||| || | | ||| | | | |||| | | Sbjct 19066 TGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGAT- 19010 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 || || | ||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 19009 -------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTC 18958 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGT 247 || |||| | | | |||| |||||| |||||| || ||||||||||||||| ||| Sbjct 18957 GACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGT 18898 Query 248 A 248 | Sbjct 18897 A 18897 >seq6284 Length=6094 Score = 140 bits (154), Expect = 5e-31 Identities = 173/237 (73%), Gaps = 20/237 (8%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 4500 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGGAGACC 4442 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || |||||||| || Sbjct 4441 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCCCCT------------- 4395 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || ||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 4394 TTGTG----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCT 4341 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || | |||| | || | ||| ||||||||||||| |||||||||||||||| Sbjct 4340 TAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCGGTTT 4284 >seq7050 Length=3442 Score = 123 bits (136), Expect = 3e-26 Identities = 176/248 (71%), Gaps = 21/248 (8%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||| ||||| || |||||||| ||| | | || ||| Sbjct 3130 CTTAACCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATCTTGCGATTTT-GCAG 3072 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||| | || || ||| | ||| | Sbjct 3071 AGTCCTGTGTTTTTGATAAACAGTCGCCTGGGCCTTTTTACTGAG----------GCTGA 3022 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || | ||| || || ||||||||||||||| || | |||||||| || Sbjct 3021 -CATTGCTGTCA---------GCGACCTTTCTCCCGAAGTTACAGGTCGATTTTGCCTAA 2972 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||||||| || | ||| |||||||| || |||| | || ||||||||||||| Sbjct 2971 TTCCTTAACCATGAATCGCTCGAGCGCCTTAGGATACTCTCCTCGATCACCTGTGTCGGT 2912 Query 241 TTACGGTA 248 |||||||| Sbjct 2911 TTACGGTA 2904 >seq6090 Length=481770 Score = 116 bits (128), Expect = 5e-24 Identities = 170/238 (71%), Gaps = 23/238 (10%) Strand=Plus/Plus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || |||| Sbjct 39844 CCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGAAGACC 39902 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 ||||||||| |||||||||||| || || | |||||| || Sbjct 39903 TGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACAGCGACCCCCT------------- 39949 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || || |||||||||||| ||||||||| |||| |||||||||| ||||| Sbjct 39950 TTGTG----AGGAG--GCACCCCTTCTCTCGAAGTTACAGGGCTATTTTGCCGAGTTCCT 40003 Query 186 TAACCACAGTTCAC-CCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTT 242 || | |||| | || | ||| ||||||||||||| |||||||||||||||| Sbjct 40004 TAGAGAGAGTTGTCTTCG--CCCCTAGGTATTCTCTACCTATCCACCTGTGTCGGTTT 40059 >seq11122 Length=782 Score = 107 bits (118), Expect = 3e-21 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 147 CCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAACG 206 ||||||||||||||||||| ||||| ||||| | |||||| ||| ||||| | | | || Sbjct 757 CCTTCTCCCGAAGTTACGGTGCCATGTTGCCTAGTTCCTTCACCCGAGTTCTCTCAAGCG 698 Query 207 CCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| || |||||| ||| |||||||||||||||||||||| Sbjct 697 CCTGAGAATTCTCATCCTACCCACCTGTGTCGGTTTACGGTA 656 >seq8932 Length=1192 Score = 80.6 bits (88), Expect = 4e-13 Identities = 70/86 (81%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| ||||||| |||||||||||||||| || ||||| || |||| ||| || ||| Sbjct 107 TTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTGTTTGCAGA 49 Query 62 GACCTGTGTTTTTAGTAAACAGTCGC 87 | ||||||||||| ||||||||||| Sbjct 48 GTGCTGTGTTTTTAATAAACAGTCGC 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694299666795