Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01000567.1
Length=197
Score E
Sequences producing significant alignments: (Bits) Value
seq7050 125 8e-27
seq6284 93.3 4e-17
seq6090 87.8 2e-15
seq14093 86.0 7e-15
seq5578 86.0 7e-15
>seq7050
Length=3442
Score = 125 bits (138), Expect = 8e-27
Identities = 135/175 (77%), Gaps = 3/175 (2%)
Strand=Plus/Plus
Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81
|| |||| |||||| || ||| | || ||| |||||||||| ||| || ||| |||||
Sbjct 2907 CGTAAACCGACACAGGTGATCGAGGAGAGTATCCTAAGGCGCTCGAGCGATTCATGGTTA 2966
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141
||||| |||||||| | ||||||||||||||| ||| |||| || ||| |||| |
Sbjct 2967 AGGAATTAGGCAAAATCGACCTGTAACTTCGGGAGAAA-GGTCGCT-GACAGCAATGTCA 3024
Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196
| | ||| || ||| |||||| |||||||| |||||||||||| || ||| ||
Sbjct 3025 -GCCTCAGTAAAAAGGCCCAGGCGACTGTTTATCAAAAACACAGGACTCTGCAAA 3078
>seq6284
Length=6094
Score = 93.3 bits (102), Expect = 4e-17
Identities = 87/110 (79%), Gaps = 2/110 (2%)
Strand=Plus/Plus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| |
Sbjct 4339 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 4396
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||||| || ||| || ||| |||||||| |||||||||||| ||
Sbjct 4397 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 4446
>seq6090
Length=481770
Score = 87.8 bits (96), Expect = 2e-15
Identities = 86/110 (78%), Gaps = 2/110 (2%)
Strand=Plus/Minus
Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139
||||||||| |||||| | ||||||||||||| || || |||| ||| | || ||| |
Sbjct 40005 TAAGGAACTCGGCAAAATAGCCCTGTAACTTCGAGAGAAGGGGTGCCTCCTCACAAA--G 39948
Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189
| || ||| | || ||| || ||| |||||||| |||||||||||| ||
Sbjct 39947 GGGGTCGCTGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 39898
>seq14093
Length=47550
Score = 86.0 bits (94), Expect = 7e-15
Identities = 79/100 (79%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83
||||| |||||| || | || || ||||||| |||||||||| ||| || | |||
Sbjct 18902 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 18961
Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123
||||| |||||| |||||| |||||||||||| || ||||
Sbjct 18962 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 19001
>seq5578
Length=1651365
Score = 86.0 bits (94), Expect = 7e-15
Identities = 82/104 (79%), Gaps = 2/104 (2%)
Strand=Plus/Minus
Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141
||||||| |||||| | |||| |||||||||||| || |||| ||| | || ||| ||
Sbjct 1112568 AGGAACTTGGCAAAATAACCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGG 1112511
Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAG 185
|| | || || |||| || ||||||| |||| |||||||||||
Sbjct 1112510 GGTCACAATGACTAGGACCGGGCAACTATTTACCAAAAACACAG 1112467
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531123247410
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |