Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq7050 125 8e-27 seq6284 93.3 4e-17 seq6090 87.8 2e-15 seq14093 86.0 7e-15 seq5578 86.0 7e-15 >seq7050 Length=3442 Score = 125 bits (138), Expect = 8e-27 Identities = 135/175 (77%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 || |||| |||||| || ||| | || ||| |||||||||| ||| || ||| ||||| Sbjct 2907 CGTAAACCGACACAGGTGATCGAGGAGAGTATCCTAAGGCGCTCGAGCGATTCATGGTTA 2966 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||| |||||||| | ||||||||||||||| ||| |||| || ||| |||| | Sbjct 2967 AGGAATTAGGCAAAATCGACCTGTAACTTCGGGAGAAA-GGTCGCT-GACAGCAATGTCA 3024 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 | | ||| || ||| |||||| |||||||| |||||||||||| || ||| || Sbjct 3025 -GCCTCAGTAAAAAGGCCCAGGCGACTGTTTATCAAAAACACAGGACTCTGCAAA 3078 >seq6284 Length=6094 Score = 93.3 bits (102), Expect = 4e-17 Identities = 87/110 (79%), Gaps = 2/110 (2%) Strand=Plus/Plus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||| |||||||||||| || |||| ||| | || ||| | Sbjct 4339 TAAGGAACTCGGCAAAATAGCCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--G 4396 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||||| || ||| || ||| |||||||| |||||||||||| || Sbjct 4397 GGGGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 4446 >seq6090 Length=481770 Score = 87.8 bits (96), Expect = 2e-15 Identities = 86/110 (78%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 80 TAAGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGG 139 ||||||||| |||||| | ||||||||||||| || || |||| ||| | || ||| | Sbjct 40005 TAAGGAACTCGGCAAAATAGCCCTGTAACTTCGAGAGAAGGGGTGCCTCCTCACAAA--G 39948 Query 140 GAGGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCT 189 | || ||| | || ||| || ||| |||||||| |||||||||||| || Sbjct 39947 GGGGTCGCTGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCT 39898 >seq14093 Length=47550 Score = 86.0 bits (94), Expect = 7e-15 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 24 CAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTAAG 83 ||||| |||||| || | || || ||||||| |||||||||| ||| || | ||| Sbjct 18902 CAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAAG 18961 Query 84 GAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGT 123 ||||| |||||| |||||| |||||||||||| || |||| Sbjct 18962 GAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGT 19001 >seq5578 Length=1651365 Score = 86.0 bits (94), Expect = 7e-15 Identities = 82/104 (79%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 ||||||| |||||| | |||| |||||||||||| || |||| ||| | || ||| || Sbjct 1112568 AGGAACTTGGCAAAATAACCCCGTAACTTCGGGAGAAGGGGTGCCTCCTCACAAA--GGG 1112511 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAG 185 || | || || |||| || ||||||| |||| ||||||||||| Sbjct 1112510 GGTCACAATGACTAGGACCGGGCAACTATTTACCAAAAACACAG 1112467 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531123247410