Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq8932 165 8e-39 seq7050 105 6e-21 seq14093 87.8 2e-15 seq6284 87.8 2e-15 seq6090 78.8 9e-13 >seq8932 Length=1192 Score = 165 bits (182), Expect = 8e-39 Identities = 93/94 (99%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 65 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 124 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20 GCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTG 79 Query 125 TGACGCCTGCCCGGTGCCGGAAGGTTAATTGATG 158 ||||||||||||||||| |||||||||||||||| Sbjct 80 TGACGCCTGCCCGGTGCTGGAAGGTTAATTGATG 113 >seq7050 Length=3442 Score = 105 bits (116), Expect = 6e-21 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 60 AGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATA 119 ||||| |||||||||||| |||||||||| |||||||||| || ||| || ||||| Sbjct 3037 AGGCCCAGGCGACTGTTTATCAAAAACACAGGACTCTGCAAAATCGCAAGATGATGTATA 3096 Query 120 GGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||| |||| |||||||||||| |||||||||| Sbjct 3097 GGGTCTGACACCTGCCCGGTGCTGGAAGGTTAA 3129 >seq14093 Length=47550 Score = 87.8 bits (96), Expect = 2e-15 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114 |||||||| | ||||||||||||||||||||||| ||||||| || | || || Sbjct 19034 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 19093 Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 |||||| || |||| |||||||||||| |||| || || Sbjct 19094 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCAA 19131 >seq6284 Length=6094 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106 ||||| || |||||||| ||||||||||| |||||||||| ||| ||||| || Sbjct 4399 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 4458 Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 ||| | |||| ||| |||||||||||| |||||||||||| || Sbjct 4459 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 4504 >seq6090 Length=481770 Score = 78.8 bits (86), Expect = 9e-13 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 57 ACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGT 116 |||||||| ||||||||||| |||||||||| || ||||| || ||| | || Sbjct 39935 ACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTTCGCAAAGTCGTAAGACCATGT 39876 Query 117 ATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152 || ||| |||||||||||| |||||||||||| || Sbjct 39875 ATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTCAA 39840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476731107615