Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03]
14,915 sequences; 357,216,162 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq8932 387 3e-105
seq7050 295 2e-77
seq6284 269 7e-70
seq14093 253 5e-65
seq6090 215 1e-53
seq12171 168 2e-39
seq8923 131 4e-28
seq11122 113 1e-22
seq1924 109 1e-21
seq14277 104 6e-20
seq7337 77.0 8e-12
>seq8932
Length=1192
Score = 387 bits (428), Expect = 3e-105
Identities = 248/270 (92%), Gaps = 9/270 (3%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||| | || ||||||||||||||||||| | ||||||||||| | |||||
Sbjct 280 GCATCTTCACGGGGAATTCAATTTCACTGAGTCTCTGCTGGAGACAGCGGGGAAGTCGTT 221
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 220 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 161
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192
| ||||||||||||||||||||||||||| ||||||||||| || ||||||||
Sbjct 160 TAGTTACGGCCGCCGTTTACCGGGGCTTCAATCAAGAGCTT-GC--------ACCCCATC 110
Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 109 AATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 50
Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGC 282
||||||||||||||||||||||||||||||
Sbjct 49 AGTGCTGTGTTTTTAATAAACAGTCGCAGC 20
>seq7050
Length=3442
Score = 295 bits (326), Expect = 2e-77
Identities = 232/277 (84%), Gaps = 2/277 (1%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||| | | | ||||||||| ||| ||| ||||||| ||| ||||||
Sbjct 3313 GCATCTTCACCGATACTACAATTTCACCGAGATCATGGTTGAGACAGTGCCCAGATCGTT 3254
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3253 ACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 3194
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA--GCTAACCCCA 190
| |||||||||||||||||| |||||||| | |||||||||| ||| ||||||||
Sbjct 3193 TAGTTACGGCCGCCGTTTACTGGGGCTTCAGTTAAGAGCTTCGAATTACTTCTAACCCCC 3134
Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250
| |||||||||| |||||||||||| |||| ||||||||| || ||| || |||||
Sbjct 3133 TTCCTTAACCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATCTTGCGATTTTGC 3074
Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCT 287
||||| |||||||||| |||||||||||| |||||
Sbjct 3073 AGAGTCCTGTGTTTTTGATAAACAGTCGCCTGGGCCT 3037
>seq6284
Length=6094
Score = 269 bits (298), Expect = 7e-70
Identities = 308/418 (74%), Gaps = 27/418 (6%)
Strand=Plus/Minus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||| ||| ||||||| ||| ||||||
Sbjct 4690 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 4631
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4630 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 4571
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188
| ||||||||||||||| |||||||||||| || ||| | | | || | |||
Sbjct 4570 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 4511
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || |||||||||||| |||||||||||| ||| |||| | ||| || |||
Sbjct 4510 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 4451
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308
|| ||| |||||||||| ||||||||||| |||||||| || |||||
Sbjct 4450 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 4397
Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368
||| ||| | ||| | ||||||||||||||||||| || ||
Sbjct 4396 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 4354
Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426
||||| |||||||| ||||| |||| || ||| ||||||||||||| | ||||
Sbjct 4353 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 4296
>seq14093
Length=47550
Score = 253 bits (280), Expect = 5e-65
Identities = 303/412 (74%), Gaps = 21/412 (5%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | |||||||||| | || ||||||||||| | ||| | |||||||||| ||
Sbjct 19313 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 19254
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 19253 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 19194
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
| |||| ||||| ||||||||||||||||||||| || | ||||| || | ||
Sbjct 19193 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 19140
Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246
| | || || |||| |||||||||||| |||| || |||||| || || | |
Sbjct 19139 TTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 19080
Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306
| ||||||| ||||||||||||||||||||||| | |||||||| | | | | |
Sbjct 19079 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 19020
Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366
| | | || || |||| ||||||||||||||||||| | |
Sbjct 19019 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 18975
Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418
||||||| ||||||||| | ||||||||||||||| | |||| ||||||
Sbjct 18974 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 18923
>seq6090
Length=481770
Score = 215 bits (238), Expect = 1e-53
Identities = 297/418 (71%), Gaps = 28/418 (7%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
||||||||||| || || |||||| ||| ||| ||||||| ||| ||||||
Sbjct 39654 GCATCTTCACATACATGTCTATTTCATCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 39713
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 39714 ACGCCTTTCGTACGGGTCGGAACTTACCAGACAAGGAATTTCGCTACCTTAGGACCGTTA 39773
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188
| |||| |||||||||| ||||||||||| || ||| | | | || | |||
Sbjct 39774 TAGTTATGGCCGCCGTTCACCGGGGCTTCAGTCGCCGGCTCCCCTGTCATCAGGTCACCA 39833
Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248
| || |||||||||||| |||||||||||| ||| |||| | ||| || |||
Sbjct 39834 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 39893
Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308
|| || |||||||||| ||||||||||| |||||||| | |||||
Sbjct 39894 GCGAAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACAGCGACC------CC 39947
Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368
||| ||| | ||| | ||||||| ||||||||| | || ||
Sbjct 39948 CTTTGTGAGGA-----------------GGCACCCCTTCTCTCGAAGTTACAGGGCTATT 39990
Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426
||||| |||||||| ||||| ||| || ||| ||||||||||||| | ||||
Sbjct 39991 TTGCCGAGTTCCTTAGAGAGAGTTGTCT-TCGCCCCTAGGTATTCTCTACCTATCCAC 40047
>seq12171
Length=83436
Score = 168 bits (186), Expect = 2e-39
Identities = 132/158 (84%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
||| | |||||||||| | || ||||||||||| | ||| | |||||||||| ||
Sbjct 45101 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 45160
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 45161 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 45220
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164
| |||| ||||| ||||||||||||||||||||| ||
Sbjct 45221 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCAT 45258
>seq8923
Length=1411
Score = 131 bits (144), Expect = 4e-28
Identities = 199/280 (71%), Gaps = 9/280 (3%)
Strand=Plus/Minus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
|| |||| |||| |||||| ||| ||||||||||||||| | ||||||||
Sbjct 464 TAAACTGTATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGT 405
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
|||||||| |||||| |||| | | | | ||| | | ||||| |||||||||||||||||
Sbjct 404 ATCGTTACACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGA 345
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCT--- 183
|| | | |||| ||||||| || ||||||| || |||| | || | |
Sbjct 344 CCCTCA-CGTTAAGGCCGCCTTTAACCGGGGTATCCGTCAATTTCAAACAGTAACATGTT 286
Query 184 -AACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA--CTT 240
|| ||| |||||| |||||||||||||| |||||| ||||| | | ||
Sbjct 285 CAAAGATATCTGTTAACCAGCCGGCACCGGGCAGATTTCACACTTTATACATAGATTTTT 226
Query 241 TCGTGTTT--GCAGAGTGCTGTGTTTTTAATAAACAGTCG 278
| | ||| ||| ||||||||||||| | ||||||||||
Sbjct 225 TAATCTTTCAGCAAAGTGCTGTGTTTTAATTAAACAGTCG 186
>seq11122
Length=782
Score = 113 bits (124), Expect = 1e-22
Identities = 79/90 (88%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396
|| |||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 763 GGTGCACCTTCTCCCGAAGTTACGGTGCCATGTTGCCTAGTTCCTTCACCCGAGTTCTCT 704
Query 397 CAAGCGCCTTGGTATTCTCTACCCAACCAC 426
||||||||| | |||||| || | ||||
Sbjct 703 CAAGCGCCTGAGAATTCTCATCCTACCCAC 674
>seq1924
Length=26490
Score = 109 bits (120), Expect = 1e-21
Identities = 190/274 (69%), Gaps = 2/274 (1%)
Strand=Plus/Plus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
|| ||||||||| ||||| ||| |||||||||||| || | ||||||||
Sbjct 19984 TAAACTGCATCTGCACAGTTATTGTAATTTCACTGAGACTATTATTGAGACAGCTGTTGT 20043
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||| | ||||| |||| | | | | ||| | | ||||| |||||||||||||||||
Sbjct 20044 ATCGTGAAATCATTCATGCAAGACCGCATTTAACGGCCAAGGTATTTCGCTACCTTAGGA 20103
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
|| | || |||| ||||||| || | ||||| ||| || | | || | || |||
Sbjct 20104 CCCTCATAGTTAAGGCCGCCATTGATCGGGGTTTCCTTCTAAACCTAACCTTTTATTAAG 20163
Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTG 245
||| |||||| ||| | |||||| | |||||| | |||| | | || |
Sbjct 20164 TAAATCCGTTAACCAGCCGATATAGGGCAGACATCACACTCAATACTTTGATTTAAAATC 20223
Query 246 TT-TGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278
|| || |||||| |||||| | ||||||||||
Sbjct 20224 TTACGCGAAGTGCTTTGTTTTAATTAAACAGTCG 20257
>seq14277
Length=509
Score = 104 bits (114), Expect = 6e-20
Identities = 192/279 (69%), Gaps = 11/279 (4%)
Strand=Plus/Plus
Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66
|| |||| |||| ||||| ||| ||||||||||||||| | ||||||||
Sbjct 158 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGTCAATCATTGAGACAGCTGTTGT 217
Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126
||||||| ||||| |||| | | | | ||| | | || || ||| |||||||||||||
Sbjct 218 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 277
Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186
|| | || | || ||||||| || | |||| || |||| | | | | || ||||
Sbjct 278 CCCTCATCGGTAAGGCCGCCATTGATTGGGGTATCCTTCAAAACCAT-GGGT---ATAAC 333
Query 187 CCCA------TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240
|| | || |||||| || || |||||| |||||| | |||| | | ||
Sbjct 334 CCAAAGAAACTCCGTTAACCAGCCAACATAGGGCAGAAATCACACTCAATACTTTGATTT 393
Query 241 TCGTGTT-TGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278
| | || |||| |||||| |||||| | ||||||||||
Sbjct 394 ACATCTTATGCAAAGTGCTTTGTTTTAATTAAACAGTCG 432
>seq7337
Length=334867
Score = 77.0 bits (84), Expect = 8e-12
Identities = 66/82 (80%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127
|||||| || || || ||||| ||||||||| ||||| |||||| |||||||||||||
Sbjct 127854 TCGTTATGCTTTTTGTATAGGTCAGAACTTACCTGACAAAGAATTTTGCTACCTTAGGAC 127795
Query 128 CGTTATTGTTACGGCCGCCGTT 149
||||| |||| | |||| ||
Sbjct 127794 TGTTATAGTTATAGACGCCATT 127773
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260611951680
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