Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq8932 387 3e-105 seq7050 295 2e-77 seq6284 269 7e-70 seq14093 253 5e-65 seq6090 215 1e-53 seq12171 168 2e-39 seq8923 131 4e-28 seq11122 113 1e-22 seq1924 109 1e-21 seq14277 104 6e-20 seq7337 77.0 8e-12 >seq8932 Length=1192 Score = 387 bits (428), Expect = 3e-105 Identities = 248/270 (92%), Gaps = 9/270 (3%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || ||||||||||||||||||| | ||||||||||| | ||||| Sbjct 280 GCATCTTCACGGGGAATTCAATTTCACTGAGTCTCTGCTGGAGACAGCGGGGAAGTCGTT 221 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 220 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 161 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCATC 192 | ||||||||||||||||||||||||||| ||||||||||| || |||||||| Sbjct 160 TAGTTACGGCCGCCGTTTACCGGGGCTTCAATCAAGAGCTT-GC--------ACCCCATC 110 Query 193 AATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 252 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 109 AATTAACCTTCCAGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAG 50 Query 253 AGTGCTGTGTTTTTAATAAACAGTCGCAGC 282 |||||||||||||||||||||||||||||| Sbjct 49 AGTGCTGTGTTTTTAATAAACAGTCGCAGC 20 >seq7050 Length=3442 Score = 295 bits (326), Expect = 2e-77 Identities = 232/277 (84%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | | | ||||||||| ||| ||| ||||||| ||| |||||| Sbjct 3313 GCATCTTCACCGATACTACAATTTCACCGAGATCATGGTTGAGACAGTGCCCAGATCGTT 3254 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3253 ACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 3194 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTA--GCTAACCCCA 190 | |||||||||||||||||| |||||||| | |||||||||| ||| |||||||| Sbjct 3193 TAGTTACGGCCGCCGTTTACTGGGGCTTCAGTTAAGAGCTTCGAATTACTTCTAACCCCC 3134 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 | |||||||||| |||||||||||| |||| ||||||||| || ||| || ||||| Sbjct 3133 TTCCTTAACCTTCCAGCACCGGGCAGGTGTCAGACCCTATACATCATCTTGCGATTTTGC 3074 Query 251 AGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCT 287 ||||| |||||||||| |||||||||||| ||||| Sbjct 3073 AGAGTCCTGTGTTTTTGATAAACAGTCGCCTGGGCCT 3037 >seq6284 Length=6094 Score = 269 bits (298), Expect = 7e-70 Identities = 308/418 (74%), Gaps = 27/418 (6%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 4690 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 4631 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4630 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 4571 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 4570 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 4511 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 4510 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 4451 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 4450 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------CC 4397 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||||||||||||||| || || Sbjct 4396 CTTTGTGAGGA-----------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 4354 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| |||| || ||| ||||||||||||| | |||| Sbjct 4353 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCCAC 4296 >seq14093 Length=47550 Score = 253 bits (280), Expect = 5e-65 Identities = 303/412 (74%), Gaps = 21/412 (5%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 19313 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 19254 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 19253 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 19194 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||||| || | || Sbjct 19193 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 19140 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | || || |||| |||||||||||| |||| || |||||| || || | | Sbjct 19139 TTCTCCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 19080 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 19079 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 19020 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 19019 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 18975 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 18974 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 18923 >seq6090 Length=481770 Score = 215 bits (238), Expect = 1e-53 Identities = 297/418 (71%), Gaps = 28/418 (7%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 ||||||||||| || || |||||| ||| ||| ||||||| ||| |||||| Sbjct 39654 GCATCTTCACATACATGTCTATTTCATCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 39713 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 39714 ACGCCTTTCGTACGGGTCGGAACTTACCAGACAAGGAATTTCGCTACCTTAGGACCGTTA 39773 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | |||| |||||||||| ||||||||||| || ||| | | | || | ||| Sbjct 39774 TAGTTATGGCCGCCGTTCACCGGGGCTTCAGTCGCCGGCTCCCCTGTCATCAGGTCACCA 39833 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 39834 ACTTCCTTGACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 39893 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || || |||||||||| ||||||||||| |||||||| | ||||| Sbjct 39894 GCGAAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACAGCGACC------CC 39947 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 ||| ||| | ||| | ||||||| ||||||||| | || || Sbjct 39948 CTTTGTGAGGA-----------------GGCACCCCTTCTCTCGAAGTTACAGGGCTATT 39990 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||| |||||||| ||||| ||| || ||| ||||||||||||| | |||| Sbjct 39991 TTGCCGAGTTCCTTAGAGAGAGTTGTCT-TCGCCCCTAGGTATTCTCTACCTATCCAC 40047 >seq12171 Length=83436 Score = 168 bits (186), Expect = 2e-39 Identities = 132/158 (84%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 45101 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 45160 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 45161 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 45220 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGAT 164 | |||| ||||| ||||||||||||||||||||| || Sbjct 45221 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCAT 45258 >seq8923 Length=1411 Score = 131 bits (144), Expect = 4e-28 Identities = 199/280 (71%), Gaps = 9/280 (3%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| |||||| ||| ||||||||||||||| | |||||||| Sbjct 464 TAAACTGTATCTGCACAGCTATTCCAATTTCACTGAGTCAATCATAGAGACAGCTGTTGT 405 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 |||||||| |||||| |||| | | | | ||| | | ||||| ||||||||||||||||| Sbjct 404 ATCGTTACACCATTCATGCAAGACCGCATTTAACGGCCAAGGCATTTCGCTACCTTAGGA 345 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCT--- 183 || | | |||| ||||||| || ||||||| || |||| | || | | Sbjct 344 CCCTCA-CGTTAAGGCCGCCTTTAACCGGGGTATCCGTCAATTTCAAACAGTAACATGTT 286 Query 184 -AACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCA--CTT 240 || ||| |||||| |||||||||||||| |||||| ||||| | | || Sbjct 285 CAAAGATATCTGTTAACCAGCCGGCACCGGGCAGATTTCACACTTTATACATAGATTTTT 226 Query 241 TCGTGTTT--GCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | | ||| ||| ||||||||||||| | |||||||||| Sbjct 225 TAATCTTTCAGCAAAGTGCTGTGTTTTAATTAAACAGTCG 186 >seq11122 Length=782 Score = 113 bits (124), Expect = 1e-22 Identities = 79/90 (88%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 || |||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| Sbjct 763 GGTGCACCTTCTCCCGAAGTTACGGTGCCATGTTGCCTAGTTCCTTCACCCGAGTTCTCT 704 Query 397 CAAGCGCCTTGGTATTCTCTACCCAACCAC 426 ||||||||| | |||||| || | |||| Sbjct 703 CAAGCGCCTGAGAATTCTCATCCTACCCAC 674 >seq1924 Length=26490 Score = 109 bits (120), Expect = 1e-21 Identities = 190/274 (69%), Gaps = 2/274 (1%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || ||||||||| ||||| ||| |||||||||||| || | |||||||| Sbjct 19984 TAAACTGCATCTGCACAGTTATTGTAATTTCACTGAGACTATTATTGAGACAGCTGTTGT 20043 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||| | ||||| |||| | | | | ||| | | ||||| ||||||||||||||||| Sbjct 20044 ATCGTGAAATCATTCATGCAAGACCGCATTTAACGGCCAAGGTATTTCGCTACCTTAGGA 20103 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 || | || |||| ||||||| || | ||||| ||| || | | || | || ||| Sbjct 20104 CCCTCATAGTTAAGGCCGCCATTGATCGGGGTTTCCTTCTAAACCTAACCTTTTATTAAG 20163 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT-TCGTG 245 ||| |||||| ||| | |||||| | |||||| | |||| | | || | Sbjct 20164 TAAATCCGTTAACCAGCCGATATAGGGCAGACATCACACTCAATACTTTGATTTAAAATC 20223 Query 246 TT-TGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 || || |||||| |||||| | |||||||||| Sbjct 20224 TTACGCGAAGTGCTTTGTTTTAATTAAACAGTCG 20257 >seq14277 Length=509 Score = 104 bits (114), Expect = 6e-20 Identities = 192/279 (69%), Gaps = 11/279 (4%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 || |||| |||| ||||| ||| ||||||||||||||| | |||||||| Sbjct 158 TAAACTGTATCTGCACAGTTATTCCAATTTCACTGAGTCAATCATTGAGACAGCTGTTGT 217 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| ||||| |||| | | | | ||| | | || || ||| ||||||||||||| Sbjct 218 ATCGTTAAATCATTCATGCAAGACCGCATTTAACGGCCAGGGTATTCCGCTACCTTAGGA 277 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 || | || | || ||||||| || | |||| || |||| | | | | || |||| Sbjct 278 CCCTCATCGGTAAGGCCGCCATTGATTGGGGTATCCTTCAAAACCAT-GGGT---ATAAC 333 Query 187 CCCA------TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTT 240 || | || |||||| || || |||||| |||||| | |||| | | || Sbjct 334 CCAAAGAAACTCCGTTAACCAGCCAACATAGGGCAGAAATCACACTCAATACTTTGATTT 393 Query 241 TCGTGTT-TGCAGAGTGCTGTGTTTTTAATAAACAGTCG 278 | | || |||| |||||| |||||| | |||||||||| Sbjct 394 ACATCTTATGCAAAGTGCTTTGTTTTAATTAAACAGTCG 432 >seq7337 Length=334867 Score = 77.0 bits (84), Expect = 8e-12 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 68 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 127 |||||| || || || ||||| ||||||||| ||||| |||||| ||||||||||||| Sbjct 127854 TCGTTATGCTTTTTGTATAGGTCAGAACTTACCTGACAAAGAATTTTGCTACCTTAGGAC 127795 Query 128 CGTTATTGTTACGGCCGCCGTT 149 ||||| |||| | |||| || Sbjct 127794 TGTTATAGTTATAGACGCCATT 127773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260611951680